Generated Narrative with Details
id: fda-vcfeval-comparison
coordinateSystem: 1
patient: Patient/example
| - | ReferenceSeqId | Strand | WindowStart | WindowEnd |
| * | NC_000001.11 (Details : {http://www.ncbi.nlm.nih.gov/nuccore code 'NC_000001.11' = 'NC_000001.11) | 1 | 10453 | 101770080 |
| - | Start | End | ObservedAllele | ReferenceAllele |
| * | 13116 | 13117 | T | G |
quality
type: indel
standardSequence: file-BkZxBZ00bpJVk2q6x43b1YBx (Details : {https://precision.fda.gov/files/ code 'file-BkZxBZ00bpJVk2q6x43b1YBx' = 'file-BkZxBZ00bpJVk2q6x43b1YBx)
start: 10453
end: 101770080
method: Vcfeval + Hap.py Comparison (Details : {https://precision.fda.gov/apps/ code 'app-BxfGF8j02pBZzZxbzZxP725P' = 'app-BxfGF8j02pBZzZxbzZxP725P)
truthTP: 7749
truthFN: 2554
queryFP: 10670
gtFP: 2186
precision: 0.428005
recall: 0.752111
quality
type: snp
standardSequence: file-BkZxBZ00bpJVk2q6x43b1YBx (Details : {https://precision.fda.gov/files/ code 'file-BkZxBZ00bpJVk2q6x43b1YBx' = 'file-BkZxBZ00bpJVk2q6x43b1YBx)
start: 10453
end: 101770080
method: Vcfeval + Hap.py Comparison (Details : {https://precision.fda.gov/apps/ code 'app-BxfGF8j02pBZzZxbzZxP725P' = 'app-BxfGF8j02pBZzZxbzZxP725P)
truthTP: 92106
truthFN: 1247
queryFP: 21744
gtFP: 493
precision: 0.808602
recall: 0.986642
| - | Type | Url | Name |
| * | login | https://precision.fda.gov/jobs/job-ByxYPx809jFVy21KJG74Jg3Y | FDA |