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Contents
#
# = test/functional/bio/appl/test_blast.rb - Unit test for Bio::Blast with network connection
#
# Copyright:: Copyright (C) 2011
# Naohisa Goto <ng@bioruby.org>
# License:: The Ruby License
#
# loading helper routine for testing bioruby
require 'pathname'
load Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 3,
'bioruby_test_helper.rb')).cleanpath.to_s
# libraries needed for the tests
require 'test/unit'
require 'bio/sequence'
require 'bio/appl/blast'
module Bio
module FunctTestBlast
module NetTestBlastCommonProteinQuery
filename = File.join(BioRubyTestDataPath, 'fasta', 'EFTU_BACSU.fasta')
QuerySequence = File.read(filename).freeze
def test_query
report = nil
assert_nothing_raised {
report = @blast.query(QuerySequence)
}
assert(report.hits.size > 0)
end
end #module NetTestBlastCommonProteinQuery
class NetTestBlast_GenomeNet < Test::Unit::TestCase
include NetTestBlastCommonProteinQuery
def setup
@blast = Bio::Blast.new('blastp', 'mine-aa eco',
[ '-e', '1e-10',
'-v', '10',
'-b', '10' ],
'genomenet')
end
end #class NetTestBlast_GenomeNet
end #module FuncTestBlast
end #module Bio
Version data entries
10 entries across 10 versions & 1 rubygems