--- !ruby/object:Gem::Specification
name: pets
version: !ruby/object:Gem::Version
  version: 0.1.2
platform: ruby
authors:
- Elena Rojano, Pedro Seoane
autorequire: 
bindir: bin
cert_chain: []
date: 2019-10-24 00:00:00.000000000 Z
dependencies:
- !ruby/object:Gem::Dependency
  name: bundler
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '2.0'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '2.0'
- !ruby/object:Gem::Dependency
  name: rake
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '10.0'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '10.0'
- !ruby/object:Gem::Dependency
  name: rspec
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '3.0'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '3.0'
- !ruby/object:Gem::Dependency
  name: statistics2
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: terminal-table
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: report_html
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
description: PETS suite includes three different tools. CohortAnalyzer performs the
  calculation of several statistics that gives an overview of a cohort of patients
  to analyse. Reg2Phen uses associations between pathological phenotypes and regions
  of the genome (these associations can be calculated from the cohort of patients
  if they include genotypic & phenotypic information using NetAnalyzer, another Ruby
  gem) to find, for a given genomic region, which pathological phenotypes have been
  associated with that region. The third tool, Phen2Reg, is a predictor that using
  the same associations as Reg2Phen, predicts which genomic regions can be the cause
  of a list of pathological phenotypes observed in a patient.
email:
- elenarojano@uma.es, seoanezonjic@uma.es
executables: []
extensions: []
extra_rdoc_files: []
files:
- ".gitignore"
- ".rspec"
- ".travis.yml"
- Gemfile
- LICENSE.txt
- README.md
- Rakefile
- bin/area_under_curve_pr.rb
- bin/association_metrics_average.rb
- bin/coPatReporter.rb
- bin/console
- bin/fmeasure_index.rb
- bin/get_PR_values.rb
- bin/get_clusters.R
- bin/get_network_nodes.rb
- bin/lines.R
- bin/merge_by_cluster.rb
- bin/merge_pairs.rb
- bin/paco_translator.rb
- bin/phen2reg.rb
- bin/phen2reg_predictor_check.rb
- bin/plot_area.R
- bin/plot_boxplot.R
- bin/plot_density.R
- bin/plot_scatterplot.R
- bin/reg2phen.rb
- bin/region_to_patients_generator.rb
- bin/relate_CI_to_association_value.rb
- bin/setup
- bin/standardize_scores.R
- bin/xyplot_graph.R
- external_data/biosystems_gene.gz
- external_data/bsid2info.gz
- external_data/chromosome_sizes_hg19.txt
- external_data/gene_data.gz
- external_data/gene_data_with_pathways.gz
- external_data/gene_location.gz
- external_data/hp.obo
- external_data/remove
- lib/pets.rb
- lib/pets/coPatReporterMethods.rb
- lib/pets/generalMethods.rb
- lib/pets/phen2reg_methods.rb
- lib/pets/version.rb
- pets.gemspec
- templates/cohort_report.erb
- templates/patient_report.erb
homepage: https://bitbucket.org/elenarojano/reg2phen/src/master/bin/reg2phen.rb
licenses:
- MIT
metadata: {}
post_install_message: 
rdoc_options: []
require_paths:
- lib
required_ruby_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">="
    - !ruby/object:Gem::Version
      version: '0'
required_rubygems_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">="
    - !ruby/object:Gem::Version
      version: '0'
requirements: []
rubyforge_project: 
rubygems_version: 2.6.14
signing_key: 
specification_version: 4
summary: Suite with predictive tools.
test_files: []