INFO bio-gff3: ---- Digest DB and store data in mRNA Hash <> INFO bio-gff3: Added transcript with component ID Transcript:trans-1 <> INFO bio-gff3: Adding exon <> INFO bio-gff3: Adding exon <> INFO bio-gff3: Adding exon <> INFO bio-gff3: Adding CDS <> INFO bio-gff3: Adding CDS <> INFO bio-gff3: Adding CDS <> INFO bio-gff3: Added transcript with component ID Transcript:trans-2 <> INFO bio-gff3: Adding exon <> INFO bio-gff3: Adding exon <> INFO bio-gff3: Adding exon <> WARN bio-gff3: Record with unknown ID. . . . . . . . . WARN bio-gff3: Container has no ID, so using sequence name instead INFO bio-gff3: Added Component with component ID Contig2 1 2000 <> WARN bio-gff3: Container has no ID, so using sequence name instead INFO bio-gff3: Added Component with component ID Contig2 2001 5000 <> WARN bio-gff3: Container has no ID, so using sequence name instead INFO bio-gff3: Added Component with component ID Contig2 5001 20000 <> WARN bio-gff3: Container has no ID, so using sequence name instead INFO bio-gff3: Added Component with component ID Contig2 2001 37450 <> INFO bio-gff3: Added transcript with component ID Transcript:trans-3 <> INFO bio-gff3: Added transcript with component ID Transcript:trans-4 <> WARN bio-gff3: Record with unknown ID. . . . . . . . . WARN bio-gff3: Record with unknown ID. . . . . . . . . INFO bio-gff3: Added Component with component ID Clone:AL12345.2 <> INFO bio-gff3: Adding mRNA <> INFO bio-gff3: Adding CDS <> INFO bio-gff3: Adding CDS <> INFO bio-gff3: Adding CDS <> WARN bio-gff3: Record with unknown ID. . . . . . . . . INFO bio-gff3: Added Component with component ID Clone:ABC123 <> INFO bio-gff3: Added gene with component ID Misc:thing1 <> INFO bio-gff3: Adding gene <> INFO bio-gff3: Adding mRNA <> INFO bio-gff3: Adding CDS <> WARN bio-gff3: Record with unknown ID. . . . . . . . . INFO bio-gff3: Added contig with component ID test01 <> INFO bio-gff3: Added gene with component ID gene01 <> INFO bio-gff3: Adding gene <> INFO bio-gff3: Adding mRNA <> INFO bio-gff3: Adding mRNA <> INFO bio-gff3: Adding mRNA <> INFO bio-gff3: Adding exon <> INFO bio-gff3: Adding exon <> INFO bio-gff3: Adding exon <> INFO bio-gff3: Adding CDS <> INFO bio-gff3: Adding CDS <> INFO bio-gff3: Adding CDS <> INFO bio-gff3: Adding CDS <> INFO bio-gff3: find_component: Matched (long search) column 0 and location WARN bio-gff3: No sequence information for INFO bio-gff3: find_component: Matched (long search) column 0 and location WARN bio-gff3: No sequence information for INFO bio-gff3: find_component: Matched (long search) column 0 and location WARN bio-gff3: No sequence information for INFO bio-gff3: find_component: Matched seqname >cds_short Sequence:test01_1:400 (3:14) GAAGATTTGTAT INFO bio-gff3: find_component: Matched seqname >cds1 Sequence:test01_1:400 (164:190, 192:200) TGGCGACTATCGGTCGAAGTTAAGACATTCATGGGC INFO bio-gff3: find_component: Matched seqname >cds2 Sequence:test01_1:400 (192:200) TTCATGGGC