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Contents
require File.join(File.expand_path(File.dirname(__FILE__)), '../..', 'test_helper.rb')
require 'rbbt/knowledge_base/traverse'
require 'rbbt/workflow'
class TestKnowledgeBaseTraverse < Test::Unit::TestCase
def setup
Workflow.require_workflow "Genomics"
end
def kb
Genomics.knowledge_base
end
def test_traverse
rules = []
rules << "?1 pina SF3B1 - Method=MI:0006"
rules << "TP53 pina ?2"
rules << "?2 pina ?1"
res = kb.traverse rules
assert res.first.include? "?1"
end
def test_traverse2
rules = []
rules << "?target =pina SF3B1"
rules << "?1 pina ?target - Method=MI:0006"
rules << "TP53 pina ?2"
rules << "?2 pina ?1"
res = kb.traverse rules
assert res.first.include? "?1"
end
def test_traverse3
rules = []
rules << "?target = ENSG00000115524"
rules << "?1 pina ?target - Method=MI:0006"
rules << "TP53 pina ?2"
rules << "?2 pina ?1"
res = kb.traverse rules
assert res.first.include? "?1"
end
def test_traverse_acc
Log.severity = 0
rules_str=<<-EOF
?target{
?target pina SF3B1
}
?1 pina TP53
?1 pina ?target
EOF
rules = rules_str.split "\n"
res = kb.traverse rules
iii res
assert res.first.include? "?1"
end
def test_path
rules = []
rules << "?1 pina ARPC2"
rules << "ARPC3 pina ?2"
rules << "?2 pina ?1"
res = kb.traverse rules
assert res.first.include? "?1"
end
def test_path2
rules = []
rules << "?1 pina SF3B1"
rules << "?2 pina SF3B1"
rules << "?1 pina ?2"
res = kb.traverse rules
assert res.first.include? "?1"
end
def test_wildcard_db
rules = []
rules << "?1 ?db SF3B1 - Method=MI:0006"
res = kb.traverse rules
assert res.first.include? "?1"
end
end
Version data entries
18 entries across 18 versions & 1 rubygems