Contents

require File.expand_path(File.dirname(__FILE__) + '/../../test_helper')

require 'rbbt/sources/pubmed'
require 'test/unit'

class TestPubMed < Test::Unit::TestCase

  def test_mesh
    pmid = '10866666'
    assert_include PubMed.get_article(pmid).mesh, "D016475"
  end

  def _test_substance
    pmid = '10866666'
    assert_include PubMed.get_article(pmid).substance, "C000717247"
  end

  def _test_get_article
    pmid = '16438716'
    assert(PubMed.get_article(pmid).title == "Discovering semantic features in the literature: a foundation for building functional associations.")
    
    pmids = ['16438716', 17204154]
    assert(PubMed.get_article(pmids)[pmid].title == "Discovering semantic features in the literature: a foundation for building functional associations.")
  end

  def _test_get_multi_abstract
    pmid = "32141403"

    assert PubMed.get_article(pmid).abstract.include?("This study shows PCOS patients are at increased risk of incident schizophrenia, and the metformin treatment has a protective effect against incident schizophrenia.")
  end
 
  def _test_full_text
    pmid = '16438716'
    assert(PubMed.get_article(pmid).full_text =~ /Discovering/)
  end

  def _test_pmc_full_xml
    pmid = '4304705'
    assert PubMed.get_article(pmid).pmc_full_xml.include?("HBV antigen")
  end
 
 
  def _test_query
    assert(PubMed.query('chagoyen[All Fields] AND ("loattrfull text"[sb] AND hasabstract[text])').include? '16438716')
  end

  def _test_year
    pmid = '16438716'
    assert_equal "2006", PubMed.get_article(pmid).year
  end

  def _test_bibentry
    assert("vazquez2008sent", PubMed::Article.make_bibentry('vazquez', 2008, "SENT: Semantic features in text"))
    assert("vazquez2008aes", PubMed::Article.make_bibentry('vazquez', 2008, "An Example System"))
  end

  def _test_missing
    pmids = '18627426,014966295'.split(",")
    Log.severity = 0
    assert PubMed.get_article(pmids).include? "014966295"
    assert ! PubMed.get_article(pmids).include?("18627426")
  end

end

Version data entries

2 entries across 2 versions & 1 rubygems

Version	Path
rbbt-sources-3.4.2	test/rbbt/sources/test_pubmed.rb
rbbt-sources-3.4.1	test/rbbt/sources/test_pubmed.rb