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# bio-fastqc [](http://travis-ci.org/inutano/bioruby-fastqc) A ruby parser for [FastQC](http://www.bioinformatics.babraham.ac.uk/projects/fastqc/) data. ## Reqruirements Ruby 2.0 or later ## Installation ```sh gem install bio-fastqc ``` ## Usage ```ruby require 'bio-fastqc' # extract data from zipfile zip_file = "/path/to/data_fastqc.zip" data = Bio::FastQC::Data.read(zip_file) parser = Bio::FastQC::Parser.new(data) parser.summary ``` Parse FastQC data as json format by command line tool: ```sh $ fastqc-util parse /path/to/data_fastqc.zip ``` ## Project home page Information on the source tree, documentation, examples, issues and how to contribute, see http://github.com/inutano/bioruby-fastqc The BioRuby community is on IRC server: irc.freenode.org, channel: #bioruby. ## Cite If you use this software, please cite one of * [BioRuby: bioinformatics software for the Ruby programming language](http://dx.doi.org/10.1093/bioinformatics/btq475) * [Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics](http://dx.doi.org/10.1093/bioinformatics/bts080) ## Biogems.info This Biogem is published at (http://biogems.info/index.html#bio-fastqc) ## Copyright Copyright (c) 2015 Tazro Inutano Ohta. See LICENSE.txt for further details.
Version data entries
24 entries across 24 versions & 1 rubygems