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Versions: 10
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Contents
require 'ms/cv/paramable'
module MS
class Mzml
class Scan
include MS::CV::Paramable
# (optional) the MS::Mzml::Spectrum object from which the precursor is
# derived. (the sourceFileRef is derived from this spectrum object if
# from_external_source_file == true)
attr_accessor :spectrum
# a boolean indicating the spectrum is from an external source file
attr_accessor :from_external_source_file
# an InstrumentConfiguration object
attr_accessor :instrument_configuration
# ScanWindow objects
attr_accessor :scan_windows
def initialize(opts={params: []}, &block)
describe!(*opts[:params])
block.call(self) if block
end
def to_xml(builder)
atts = {}
if @from_external_source_file
atts[:sourceFileRef] = @spectrum.source_file.id
atts[:externalSpectrumRef] = @spectrum.id
else
atts[:spectrumRef] = @spectrum.id if @spectrum
end
atts[:instrumentConfigurationRef] = @instrument_configuration.id if @instrument_configuration
builder.scan(atts) do |prec_n|
super(prec_n) # description
ScanWindow.list_xml(@scan_windows, prec_n) if @scan_windows
end
end
end
end
end
Version data entries
10 entries across 10 versions & 1 rubygems