--- !ruby/object:Gem::Specification
name: full_lengther_next
version: !ruby/object:Gem::Version
  version: 0.9.9
platform: ruby
authors:
- Pedro Seoane
- Noe Fernandez
- Dario Guerrero
autorequire: 
bindir: bin
cert_chain: []
date: 2018-03-12 00:00:00.000000000 Z
dependencies:
- !ruby/object:Gem::Dependency
  name: xml-simple
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: scbi_fasta
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: scbi_blast
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: scbi_mapreduce
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: scbi_zcat
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: bio-cd-hit-report
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: report_html
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ">="
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: bundler
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '1.12'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '1.12'
- !ruby/object:Gem::Dependency
  name: rake
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '10.0'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '10.0'
- !ruby/object:Gem::Dependency
  name: rspec
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '3.0'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '3.0'
description: FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work
  in parallel and in a distributed way to minimise computing time. It is able to classify
  unigenes to full-length, 5’-end, 3’-end and internal, suggesting which unknown genes
  are coding or not. It will be also shown that FULL-LENGTHERNEXT fixes frame shifts,
  one of the main mistake found in wrong entries of full-length sequences databases,
  and it is a fast tool to compare different transcriptome assemblies.
email:
- seoanezonjic@hotmail.com
- noeisneo@gmail.com
- dariogf@gmail.com
executables:
- console
- download_fln_dbs.rb
- full_lengther_next
- make_test_dataset.rb
- make_user_db.rb
- setup
extensions: []
extra_rdoc_files: []
files:
- ".gitignore"
- ".rspec"
- ".travis.yml"
- CODE_OF_CONDUCT.md
- Gemfile
- LICENSE.txt
- README.md
- Rakefile
- bin/console
- bin/download_fln_dbs.rb
- bin/full_lengther_next
- bin/make_test_dataset.rb
- bin/make_user_db.rb
- bin/setup
- full_lengther_next.gemspec
- lib/full_lengther_next.rb
- lib/full_lengther_next/artifacts.rb
- lib/full_lengther_next/blast_functions.rb
- lib/full_lengther_next/cdhit.rb
- lib/full_lengther_next/chimeric_seqs.rb
- lib/full_lengther_next/common_functions.rb
- lib/full_lengther_next/exonerate_result.rb
- lib/full_lengther_next/fl_analysis.rb
- lib/full_lengther_next/fl_string_utils.rb
- lib/full_lengther_next/fln_stats.rb
- lib/full_lengther_next/go_methods.rb
- lib/full_lengther_next/handle_db.rb
- lib/full_lengther_next/mapping.rb
- lib/full_lengther_next/my_worker.rb
- lib/full_lengther_next/my_worker_EST.rb
- lib/full_lengther_next/my_worker_manager_EST.rb
- lib/full_lengther_next/my_worker_manager_fln.rb
- lib/full_lengther_next/nc_rna.rb
- lib/full_lengther_next/orf.rb
- lib/full_lengther_next/reptrans.rb
- lib/full_lengther_next/sequence.rb
- lib/full_lengther_next/test_code.rb
- lib/full_lengther_next/types.rb
- lib/full_lengther_next/une_los_hit.rb
- lib/full_lengther_next/version.rb
- lib/full_lengther_next/warnings.rb
- report_templates/general_summary.erb
- report_templates/mapping_summary.erb
- report_templates/reptrans_summary.erb
homepage: https://github.com/seoanezonjic
licenses:
- MIT
metadata: {}
post_install_message: 
rdoc_options: []
require_paths:
- lib
required_ruby_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">="
    - !ruby/object:Gem::Version
      version: '0'
required_rubygems_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">="
    - !ruby/object:Gem::Version
      version: '0'
requirements: []
rubyforge_project: 
rubygems_version: 2.4.8
signing_key: 
specification_version: 4
summary: Tool to annotate transcriptomes and it is able to stablish the integrity
  of each transcript. Also, FLN can detect novel genes on a target organism.
test_files: []