--- !ruby/object:Gem::Specification
name: bio
version: !ruby/object:Gem::Version
  version: 2.0.3
platform: ruby
authors:
- BioRuby project
autorequire: 
bindir: bin
cert_chain: []
date: 2021-11-05 00:00:00.000000000 Z
dependencies: []
description: BioRuby is a library for bioinformatics (biology + information science).
email: staff@bioruby.org
executables: []
extensions: []
extra_rdoc_files:
- KNOWN_ISSUES.rdoc
- README.rdoc
- README_DEV.rdoc
- RELEASE_NOTES.rdoc
- doc/Changes-1.3.rdoc
- doc/RELEASE_NOTES-1.4.0.rdoc
- doc/RELEASE_NOTES-1.4.1.rdoc
- doc/RELEASE_NOTES-1.4.2.rdoc
- doc/RELEASE_NOTES-1.4.3.rdoc
- doc/RELEASE_NOTES-1.5.0.rdoc
files:
- ".travis.yml"
- BSDL
- COPYING
- COPYING.ja
- ChangeLog
- GPL
- Gemfile
- KNOWN_ISSUES.rdoc
- LEGAL
- LGPL
- README.rdoc
- README_DEV.rdoc
- RELEASE_NOTES.rdoc
- Rakefile
- appveyor.yml
- bioruby.gemspec
- bioruby.gemspec.erb
- doc/ChangeLog-1.4.3
- doc/ChangeLog-1.5.0
- doc/ChangeLog-before-1.3.1
- doc/ChangeLog-before-1.4.2
- doc/Changes-0.7.rd
- doc/Changes-1.3.rdoc
- doc/RELEASE_NOTES-1.4.0.rdoc
- doc/RELEASE_NOTES-1.4.1.rdoc
- doc/RELEASE_NOTES-1.4.2.rdoc
- doc/RELEASE_NOTES-1.4.3.rdoc
- doc/RELEASE_NOTES-1.5.0.rdoc
- doc/Tutorial.rd
- doc/Tutorial.rd.html
- doc/Tutorial.rd.ja
- doc/Tutorial.rd.ja.html
- doc/bioruby.css
- etc/bioinformatics/seqdatabase.ini
- gemfiles/Gemfile.travis-jruby1.8
- gemfiles/Gemfile.travis-jruby1.9
- gemfiles/Gemfile.travis-rbx
- gemfiles/Gemfile.travis-ruby1.8
- gemfiles/Gemfile.travis-ruby1.9
- gemfiles/Gemfile.windows
- gemfiles/modify-Gemfile.rb
- gemfiles/prepare-gemspec.rb
- lib/bio.rb
- lib/bio/alignment.rb
- lib/bio/appl/bl2seq/report.rb
- lib/bio/appl/blast.rb
- lib/bio/appl/blast/format0.rb
- lib/bio/appl/blast/format8.rb
- lib/bio/appl/blast/genomenet.rb
- lib/bio/appl/blast/ncbioptions.rb
- lib/bio/appl/blast/remote.rb
- lib/bio/appl/blast/report.rb
- lib/bio/appl/blast/rexml.rb
- lib/bio/appl/blast/rpsblast.rb
- lib/bio/appl/blast/wublast.rb
- lib/bio/appl/blat/report.rb
- lib/bio/appl/clustalw.rb
- lib/bio/appl/clustalw/report.rb
- lib/bio/appl/emboss.rb
- lib/bio/appl/fasta.rb
- lib/bio/appl/fasta/format10.rb
- lib/bio/appl/gcg/msf.rb
- lib/bio/appl/gcg/seq.rb
- lib/bio/appl/genscan/report.rb
- lib/bio/appl/hmmer.rb
- lib/bio/appl/hmmer/report.rb
- lib/bio/appl/iprscan/report.rb
- lib/bio/appl/mafft.rb
- lib/bio/appl/mafft/report.rb
- lib/bio/appl/meme/mast.rb
- lib/bio/appl/meme/mast/report.rb
- lib/bio/appl/meme/motif.rb
- lib/bio/appl/muscle.rb
- lib/bio/appl/paml/baseml.rb
- lib/bio/appl/paml/baseml/report.rb
- lib/bio/appl/paml/codeml.rb
- lib/bio/appl/paml/codeml/rates.rb
- lib/bio/appl/paml/codeml/report.rb
- lib/bio/appl/paml/common.rb
- lib/bio/appl/paml/common_report.rb
- lib/bio/appl/paml/yn00.rb
- lib/bio/appl/paml/yn00/report.rb
- lib/bio/appl/phylip/alignment.rb
- lib/bio/appl/phylip/distance_matrix.rb
- lib/bio/appl/probcons.rb
- lib/bio/appl/psort.rb
- lib/bio/appl/psort/report.rb
- lib/bio/appl/pts1.rb
- lib/bio/appl/sim4.rb
- lib/bio/appl/sim4/report.rb
- lib/bio/appl/sosui/report.rb
- lib/bio/appl/spidey/report.rb
- lib/bio/appl/targetp/report.rb
- lib/bio/appl/tcoffee.rb
- lib/bio/appl/tmhmm/report.rb
- lib/bio/command.rb
- lib/bio/compat/features.rb
- lib/bio/compat/references.rb
- lib/bio/data/aa.rb
- lib/bio/data/codontable.rb
- lib/bio/data/na.rb
- lib/bio/db.rb
- lib/bio/db/aaindex.rb
- lib/bio/db/embl/common.rb
- lib/bio/db/embl/embl.rb
- lib/bio/db/embl/embl_to_biosequence.rb
- lib/bio/db/embl/format_embl.rb
- lib/bio/db/embl/sptr.rb
- lib/bio/db/embl/swissprot.rb
- lib/bio/db/embl/trembl.rb
- lib/bio/db/embl/uniprot.rb
- lib/bio/db/embl/uniprotkb.rb
- lib/bio/db/fantom.rb
- lib/bio/db/fasta.rb
- lib/bio/db/fasta/defline.rb
- lib/bio/db/fasta/fasta_to_biosequence.rb
- lib/bio/db/fasta/format_fasta.rb
- lib/bio/db/fasta/format_qual.rb
- lib/bio/db/fasta/qual.rb
- lib/bio/db/fasta/qual_to_biosequence.rb
- lib/bio/db/fastq.rb
- lib/bio/db/fastq/fastq_to_biosequence.rb
- lib/bio/db/fastq/format_fastq.rb
- lib/bio/db/genbank/common.rb
- lib/bio/db/genbank/ddbj.rb
- lib/bio/db/genbank/format_genbank.rb
- lib/bio/db/genbank/genbank.rb
- lib/bio/db/genbank/genbank_to_biosequence.rb
- lib/bio/db/genbank/genpept.rb
- lib/bio/db/genbank/refseq.rb
- lib/bio/db/gff.rb
- lib/bio/db/go.rb
- lib/bio/db/kegg/brite.rb
- lib/bio/db/kegg/common.rb
- lib/bio/db/kegg/compound.rb
- lib/bio/db/kegg/drug.rb
- lib/bio/db/kegg/enzyme.rb
- lib/bio/db/kegg/expression.rb
- lib/bio/db/kegg/genes.rb
- lib/bio/db/kegg/genome.rb
- lib/bio/db/kegg/glycan.rb
- lib/bio/db/kegg/keggtab.rb
- lib/bio/db/kegg/kgml.rb
- lib/bio/db/kegg/module.rb
- lib/bio/db/kegg/orthology.rb
- lib/bio/db/kegg/pathway.rb
- lib/bio/db/kegg/reaction.rb
- lib/bio/db/lasergene.rb
- lib/bio/db/litdb.rb
- lib/bio/db/medline.rb
- lib/bio/db/nbrf.rb
- lib/bio/db/newick.rb
- lib/bio/db/nexus.rb
- lib/bio/db/pdb.rb
- lib/bio/db/pdb/atom.rb
- lib/bio/db/pdb/chain.rb
- lib/bio/db/pdb/chemicalcomponent.rb
- lib/bio/db/pdb/model.rb
- lib/bio/db/pdb/pdb.rb
- lib/bio/db/pdb/residue.rb
- lib/bio/db/pdb/utils.rb
- lib/bio/db/prosite.rb
- lib/bio/db/rebase.rb
- lib/bio/db/sanger_chromatogram/abif.rb
- lib/bio/db/sanger_chromatogram/chromatogram.rb
- lib/bio/db/sanger_chromatogram/chromatogram_to_biosequence.rb
- lib/bio/db/sanger_chromatogram/scf.rb
- lib/bio/db/soft.rb
- lib/bio/db/transfac.rb
- lib/bio/feature.rb
- lib/bio/io/das.rb
- lib/bio/io/fastacmd.rb
- lib/bio/io/fetch.rb
- lib/bio/io/flatfile.rb
- lib/bio/io/flatfile/autodetection.rb
- lib/bio/io/flatfile/bdb.rb
- lib/bio/io/flatfile/buffer.rb
- lib/bio/io/flatfile/index.rb
- lib/bio/io/flatfile/indexer.rb
- lib/bio/io/flatfile/splitter.rb
- lib/bio/io/hinv.rb
- lib/bio/io/ncbirest.rb
- lib/bio/io/pubmed.rb
- lib/bio/io/registry.rb
- lib/bio/io/togows.rb
- lib/bio/location.rb
- lib/bio/map.rb
- lib/bio/pathway.rb
- lib/bio/reference.rb
- lib/bio/sequence.rb
- lib/bio/sequence/aa.rb
- lib/bio/sequence/adapter.rb
- lib/bio/sequence/common.rb
- lib/bio/sequence/compat.rb
- lib/bio/sequence/dblink.rb
- lib/bio/sequence/format.rb
- lib/bio/sequence/format_raw.rb
- lib/bio/sequence/generic.rb
- lib/bio/sequence/na.rb
- lib/bio/sequence/quality_score.rb
- lib/bio/sequence/sequence_masker.rb
- lib/bio/tree.rb
- lib/bio/tree/output.rb
- lib/bio/util/color_scheme.rb
- lib/bio/util/color_scheme/buried.rb
- lib/bio/util/color_scheme/helix.rb
- lib/bio/util/color_scheme/hydropathy.rb
- lib/bio/util/color_scheme/nucleotide.rb
- lib/bio/util/color_scheme/strand.rb
- lib/bio/util/color_scheme/taylor.rb
- lib/bio/util/color_scheme/turn.rb
- lib/bio/util/color_scheme/zappo.rb
- lib/bio/util/contingency_table.rb
- lib/bio/util/restriction_enzyme.rb
- lib/bio/util/restriction_enzyme/analysis.rb
- lib/bio/util/restriction_enzyme/analysis_basic.rb
- lib/bio/util/restriction_enzyme/cut_symbol.rb
- lib/bio/util/restriction_enzyme/dense_int_array.rb
- lib/bio/util/restriction_enzyme/double_stranded.rb
- lib/bio/util/restriction_enzyme/double_stranded/aligned_strands.rb
- lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair.rb
- lib/bio/util/restriction_enzyme/double_stranded/cut_location_pair_in_enzyme_notation.rb
- lib/bio/util/restriction_enzyme/double_stranded/cut_locations.rb
- lib/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb
- lib/bio/util/restriction_enzyme/enzymes.yaml
- lib/bio/util/restriction_enzyme/range/cut_range.rb
- lib/bio/util/restriction_enzyme/range/cut_ranges.rb
- lib/bio/util/restriction_enzyme/range/horizontal_cut_range.rb
- lib/bio/util/restriction_enzyme/range/sequence_range.rb
- lib/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb
- lib/bio/util/restriction_enzyme/range/sequence_range/fragment.rb
- lib/bio/util/restriction_enzyme/range/sequence_range/fragments.rb
- lib/bio/util/restriction_enzyme/range/vertical_cut_range.rb
- lib/bio/util/restriction_enzyme/single_strand.rb
- lib/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb
- lib/bio/util/restriction_enzyme/single_strand_complement.rb
- lib/bio/util/restriction_enzyme/sorted_num_array.rb
- lib/bio/util/restriction_enzyme/string_formatting.rb
- lib/bio/util/sirna.rb
- lib/bio/version.rb
- sample/any2fasta.rb
- sample/benchmark_clustalw_report.rb
- sample/biofetch.rb
- sample/color_scheme_aa.rb
- sample/color_scheme_na.rb
- sample/demo_aaindex.rb
- sample/demo_aminoacid.rb
- sample/demo_bl2seq_report.rb
- sample/demo_blast_report.rb
- sample/demo_codontable.rb
- sample/demo_das.rb
- sample/demo_fasta_remote.rb
- sample/demo_fastaformat.rb
- sample/demo_genbank.rb
- sample/demo_genscan_report.rb
- sample/demo_gff1.rb
- sample/demo_go.rb
- sample/demo_hmmer_report.rb
- sample/demo_kegg_compound.rb
- sample/demo_kegg_drug.rb
- sample/demo_kegg_genome.rb
- sample/demo_kegg_glycan.rb
- sample/demo_kegg_orthology.rb
- sample/demo_kegg_reaction.rb
- sample/demo_litdb.rb
- sample/demo_locations.rb
- sample/demo_ncbi_rest.rb
- sample/demo_nucleicacid.rb
- sample/demo_pathway.rb
- sample/demo_prosite.rb
- sample/demo_psort.rb
- sample/demo_psort_report.rb
- sample/demo_pubmed.rb
- sample/demo_sequence.rb
- sample/demo_sirna.rb
- sample/demo_sosui_report.rb
- sample/demo_targetp_report.rb
- sample/demo_tmhmm_report.rb
- sample/enzymes.rb
- sample/fasta2tab.rb
- sample/fastagrep.rb
- sample/fastasort.rb
- sample/fastq2html.cwl
- sample/fastq2html.rb
- sample/fastq2html.testdata.yaml
- sample/fsplit.rb
- sample/gb2fasta.rb
- sample/gb2tab.rb
- sample/gbtab2mysql.rb
- sample/genes2nuc.rb
- sample/genes2pep.rb
- sample/genes2tab.rb
- sample/genome2rb.rb
- sample/genome2tab.rb
- sample/goslim.rb
- sample/gt2fasta.rb
- sample/na2aa.cwl
- sample/na2aa.rb
- sample/na2aa.testdata.yaml
- sample/pmfetch.rb
- sample/pmsearch.rb
- sample/rev_comp.cwl
- sample/rev_comp.rb
- sample/rev_comp.testdata.yaml
- sample/seqdatabase.ini
- sample/ssearch2tab.rb
- sample/tdiary.rb
- sample/test_restriction_enzyme_long.rb
- sample/tfastx2tab.rb
- sample/vs-genes.rb
- test/bioruby_test_helper.rb
- test/data/HMMER/hmmpfam.out
- test/data/HMMER/hmmsearch.out
- test/data/KEGG/1.1.1.1.enzyme
- test/data/KEGG/C00025.compound
- test/data/KEGG/D00063.drug
- test/data/KEGG/G00024.glycan
- test/data/KEGG/G01366.glycan
- test/data/KEGG/K02338.orthology
- test/data/KEGG/M00118.module
- test/data/KEGG/R00006.reaction
- test/data/KEGG/T00005.genome
- test/data/KEGG/T00070.genome
- test/data/KEGG/b0529.gene
- test/data/KEGG/ec00072.pathway
- test/data/KEGG/hsa00790.pathway
- test/data/KEGG/ko00312.pathway
- test/data/KEGG/map00030.pathway
- test/data/KEGG/map00052.pathway
- test/data/KEGG/rn00250.pathway
- test/data/KEGG/test.kgml
- test/data/SOSUI/sample.report
- test/data/TMHMM/sample.report
- test/data/aaindex/DAYM780301
- test/data/aaindex/PRAM900102
- test/data/bl2seq/cd8a_cd8b_blastp.bl2seq
- test/data/bl2seq/cd8a_p53_e-5blastp.bl2seq
- test/data/blast/2.2.15.blastp.m7
- test/data/blast/b0002.faa
- test/data/blast/b0002.faa.m0
- test/data/blast/b0002.faa.m7
- test/data/blast/b0002.faa.m8
- test/data/blast/blastp-multi.m7
- test/data/clustalw/example1-seqnos.aln
- test/data/clustalw/example1.aln
- test/data/command/echoarg2.bat
- test/data/command/echoarg2.sh
- test/data/embl/AB090716.embl
- test/data/embl/AB090716.embl.rel89
- test/data/fasta/EFTU_BACSU.fasta
- test/data/fasta/example1.txt
- test/data/fasta/example2.txt
- test/data/fastq/README.txt
- test/data/fastq/error_diff_ids.fastq
- test/data/fastq/error_double_qual.fastq
- test/data/fastq/error_double_seq.fastq
- test/data/fastq/error_long_qual.fastq
- test/data/fastq/error_no_qual.fastq
- test/data/fastq/error_qual_del.fastq
- test/data/fastq/error_qual_escape.fastq
- test/data/fastq/error_qual_null.fastq
- test/data/fastq/error_qual_space.fastq
- test/data/fastq/error_qual_tab.fastq
- test/data/fastq/error_qual_unit_sep.fastq
- test/data/fastq/error_qual_vtab.fastq
- test/data/fastq/error_short_qual.fastq
- test/data/fastq/error_spaces.fastq
- test/data/fastq/error_tabs.fastq
- test/data/fastq/error_trunc_at_plus.fastq
- test/data/fastq/error_trunc_at_qual.fastq
- test/data/fastq/error_trunc_at_seq.fastq
- test/data/fastq/error_trunc_in_plus.fastq
- test/data/fastq/error_trunc_in_qual.fastq
- test/data/fastq/error_trunc_in_seq.fastq
- test/data/fastq/error_trunc_in_title.fastq
- test/data/fastq/illumina_full_range_as_illumina.fastq
- test/data/fastq/illumina_full_range_as_sanger.fastq
- test/data/fastq/illumina_full_range_as_solexa.fastq
- test/data/fastq/illumina_full_range_original_illumina.fastq
- test/data/fastq/longreads_as_illumina.fastq
- test/data/fastq/longreads_as_sanger.fastq
- test/data/fastq/longreads_as_solexa.fastq
- test/data/fastq/longreads_original_sanger.fastq
- test/data/fastq/misc_dna_as_illumina.fastq
- test/data/fastq/misc_dna_as_sanger.fastq
- test/data/fastq/misc_dna_as_solexa.fastq
- test/data/fastq/misc_dna_original_sanger.fastq
- test/data/fastq/misc_rna_as_illumina.fastq
- test/data/fastq/misc_rna_as_sanger.fastq
- test/data/fastq/misc_rna_as_solexa.fastq
- test/data/fastq/misc_rna_original_sanger.fastq
- test/data/fastq/sanger_full_range_as_illumina.fastq
- test/data/fastq/sanger_full_range_as_sanger.fastq
- test/data/fastq/sanger_full_range_as_solexa.fastq
- test/data/fastq/sanger_full_range_original_sanger.fastq
- test/data/fastq/solexa_full_range_as_illumina.fastq
- test/data/fastq/solexa_full_range_as_sanger.fastq
- test/data/fastq/solexa_full_range_as_solexa.fastq
- test/data/fastq/solexa_full_range_original_solexa.fastq
- test/data/fastq/wrapping_as_illumina.fastq
- test/data/fastq/wrapping_as_sanger.fastq
- test/data/fastq/wrapping_as_solexa.fastq
- test/data/fastq/wrapping_original_sanger.fastq
- test/data/gcg/pileup-aa.msf
- test/data/genbank/CAA35997.gp
- test/data/genbank/SCU49845.gb
- test/data/genscan/sample.report
- test/data/go/selected_component.ontology
- test/data/go/selected_gene_association.sgd
- test/data/go/selected_wikipedia2go
- test/data/iprscan/merged.raw
- test/data/iprscan/merged.txt
- test/data/litdb/1717226.litdb
- test/data/medline/20146148_modified.medline
- test/data/meme/db
- test/data/meme/mast
- test/data/meme/mast.out
- test/data/meme/meme.out
- test/data/paml/codeml/control_file.txt
- test/data/paml/codeml/models/aa.aln
- test/data/paml/codeml/models/aa.dnd
- test/data/paml/codeml/models/aa.ph
- test/data/paml/codeml/models/alignment.phy
- test/data/paml/codeml/models/results0-3.txt
- test/data/paml/codeml/models/results7-8.txt
- test/data/paml/codeml/output.txt
- test/data/paml/codeml/rates
- test/data/pir/CRAB_ANAPL.pir
- test/data/prosite/prosite.dat
- test/data/refseq/nm_126355.entret
- test/data/rpsblast/misc.rpsblast
- test/data/sanger_chromatogram/test_chromatogram_abif.ab1
- test/data/sanger_chromatogram/test_chromatogram_scf_v2.scf
- test/data/sanger_chromatogram/test_chromatogram_scf_v3.scf
- test/data/sim4/complement-A4.sim4
- test/data/sim4/simple-A4.sim4
- test/data/sim4/simple2-A4.sim4
- test/data/soft/GDS100_partial.soft
- test/data/soft/GSE3457_family_partial.soft
- test/data/uniprot/p53_human.uniprot
- test/functional/bio/sequence/test_output_embl.rb
- test/functional/bio/test_command.rb
- test/network/bio/appl/blast/test_remote.rb
- test/network/bio/appl/test_blast.rb
- test/network/bio/appl/test_pts1.rb
- test/network/bio/db/kegg/test_genes_hsa7422.rb
- test/network/bio/io/test_pubmed.rb
- test/network/bio/io/test_togows.rb
- test/network/bio/test_command.rb
- test/runner.rb
- test/unit/bio/appl/bl2seq/test_report.rb
- test/unit/bio/appl/blast/test_ncbioptions.rb
- test/unit/bio/appl/blast/test_report.rb
- test/unit/bio/appl/blast/test_rpsblast.rb
- test/unit/bio/appl/clustalw/test_report.rb
- test/unit/bio/appl/gcg/test_msf.rb
- test/unit/bio/appl/genscan/test_report.rb
- test/unit/bio/appl/hmmer/test_report.rb
- test/unit/bio/appl/iprscan/test_report.rb
- test/unit/bio/appl/mafft/test_report.rb
- test/unit/bio/appl/meme/mast/test_report.rb
- test/unit/bio/appl/meme/test_mast.rb
- test/unit/bio/appl/meme/test_motif.rb
- test/unit/bio/appl/paml/codeml/test_rates.rb
- test/unit/bio/appl/paml/codeml/test_report.rb
- test/unit/bio/appl/paml/codeml/test_report_single.rb
- test/unit/bio/appl/paml/test_codeml.rb
- test/unit/bio/appl/sim4/test_report.rb
- test/unit/bio/appl/sosui/test_report.rb
- test/unit/bio/appl/targetp/test_report.rb
- test/unit/bio/appl/test_blast.rb
- test/unit/bio/appl/test_fasta.rb
- test/unit/bio/appl/test_pts1.rb
- test/unit/bio/appl/tmhmm/test_report.rb
- test/unit/bio/data/test_aa.rb
- test/unit/bio/data/test_codontable.rb
- test/unit/bio/data/test_na.rb
- test/unit/bio/db/embl/test_common.rb
- test/unit/bio/db/embl/test_embl.rb
- test/unit/bio/db/embl/test_embl_rel89.rb
- test/unit/bio/db/embl/test_embl_to_bioseq.rb
- test/unit/bio/db/embl/test_uniprot.rb
- test/unit/bio/db/embl/test_uniprotkb.rb
- test/unit/bio/db/embl/test_uniprotkb_new_part.rb
- test/unit/bio/db/fasta/test_defline.rb
- test/unit/bio/db/fasta/test_defline_misc.rb
- test/unit/bio/db/fasta/test_format_qual.rb
- test/unit/bio/db/genbank/test_common.rb
- test/unit/bio/db/genbank/test_genbank.rb
- test/unit/bio/db/genbank/test_genpept.rb
- test/unit/bio/db/kegg/test_compound.rb
- test/unit/bio/db/kegg/test_drug.rb
- test/unit/bio/db/kegg/test_enzyme.rb
- test/unit/bio/db/kegg/test_genes.rb
- test/unit/bio/db/kegg/test_genome.rb
- test/unit/bio/db/kegg/test_glycan.rb
- test/unit/bio/db/kegg/test_kgml.rb
- test/unit/bio/db/kegg/test_module.rb
- test/unit/bio/db/kegg/test_orthology.rb
- test/unit/bio/db/kegg/test_pathway.rb
- test/unit/bio/db/kegg/test_reaction.rb
- test/unit/bio/db/pdb/test_pdb.rb
- test/unit/bio/db/sanger_chromatogram/test_abif.rb
- test/unit/bio/db/sanger_chromatogram/test_scf.rb
- test/unit/bio/db/test_aaindex.rb
- test/unit/bio/db/test_fasta.rb
- test/unit/bio/db/test_fastq.rb
- test/unit/bio/db/test_gff.rb
- test/unit/bio/db/test_go.rb
- test/unit/bio/db/test_lasergene.rb
- test/unit/bio/db/test_litdb.rb
- test/unit/bio/db/test_medline.rb
- test/unit/bio/db/test_nbrf.rb
- test/unit/bio/db/test_newick.rb
- test/unit/bio/db/test_nexus.rb
- test/unit/bio/db/test_prosite.rb
- test/unit/bio/db/test_qual.rb
- test/unit/bio/db/test_rebase.rb
- test/unit/bio/db/test_soft.rb
- test/unit/bio/io/flatfile/test_autodetection.rb
- test/unit/bio/io/flatfile/test_buffer.rb
- test/unit/bio/io/flatfile/test_splitter.rb
- test/unit/bio/io/test_fastacmd.rb
- test/unit/bio/io/test_flatfile.rb
- test/unit/bio/io/test_togows.rb
- test/unit/bio/sequence/test_aa.rb
- test/unit/bio/sequence/test_common.rb
- test/unit/bio/sequence/test_compat.rb
- test/unit/bio/sequence/test_dblink.rb
- test/unit/bio/sequence/test_na.rb
- test/unit/bio/sequence/test_quality_score.rb
- test/unit/bio/sequence/test_ruby3.rb
- test/unit/bio/sequence/test_sequence_masker.rb
- test/unit/bio/test_alignment.rb
- test/unit/bio/test_command.rb
- test/unit/bio/test_db.rb
- test/unit/bio/test_feature.rb
- test/unit/bio/test_location.rb
- test/unit/bio/test_map.rb
- test/unit/bio/test_pathway.rb
- test/unit/bio/test_reference.rb
- test/unit/bio/test_sequence.rb
- test/unit/bio/test_tree.rb
- test/unit/bio/util/restriction_enzyme/analysis/test_calculated_cuts.rb
- test/unit/bio/util/restriction_enzyme/analysis/test_cut_ranges.rb
- test/unit/bio/util/restriction_enzyme/analysis/test_sequence_range.rb
- test/unit/bio/util/restriction_enzyme/double_stranded/test_aligned_strands.rb
- test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair.rb
- test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_location_pair_in_enzyme_notation.rb
- test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations.rb
- test/unit/bio/util/restriction_enzyme/double_stranded/test_cut_locations_in_enzyme_notation.rb
- test/unit/bio/util/restriction_enzyme/single_strand/test_cut_locations_in_enzyme_notation.rb
- test/unit/bio/util/restriction_enzyme/test_analysis.rb
- test/unit/bio/util/restriction_enzyme/test_cut_symbol.rb
- test/unit/bio/util/restriction_enzyme/test_dense_int_array.rb
- test/unit/bio/util/restriction_enzyme/test_double_stranded.rb
- test/unit/bio/util/restriction_enzyme/test_single_strand.rb
- test/unit/bio/util/restriction_enzyme/test_single_strand_complement.rb
- test/unit/bio/util/restriction_enzyme/test_sorted_num_array.rb
- test/unit/bio/util/restriction_enzyme/test_string_formatting.rb
- test/unit/bio/util/test_color_scheme.rb
- test/unit/bio/util/test_contingency_table.rb
- test/unit/bio/util/test_restriction_enzyme.rb
- test/unit/bio/util/test_sirna.rb
homepage: http://bioruby.org/
licenses:
- Ruby
metadata: {}
post_install_message: 
rdoc_options:
- "--main"
- README.rdoc
- "--title"
- BioRuby API documentation
- "--exclude"
- "\\.yaml\\z"
- "--line-numbers"
- "--inline-source"
require_paths:
- lib
required_ruby_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">="
    - !ruby/object:Gem::Version
      version: '0'
required_rubygems_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">="
    - !ruby/object:Gem::Version
      version: '0'
requirements: []
rubygems_version: 3.1.6
signing_key: 
specification_version: 4
summary: Bioinformatics library
test_files: []