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Contents
module Bio::PolyploidTools
class PrimerRegion
attr_accessor :snp_pos, :almost_chromosome_specific_in_mask
attr_accessor :chromosome_specific_in_mask, :sequence
attr_accessor :chromosome_specific, :almost_chromosome_specific
attr_accessor :crhomosome_specific_intron , :almost_crhomosome_specific_intron
attr_accessor :homoeologous, :position_in_mask_from_template
def initialize
@chromosome_specific = Array.new
@almost_chromosome_specific = Array.new
@crhomosome_specific_intron = Array.new
@almost_crhomosome_specific_intron = Array.new
#For deletions
@chromosome_specific_in_mask = Array.new
@almost_chromosome_specific_in_mask = Array.new
@position_in_mask_from_template = Hash.new
end
def tail_candidates
@chromosome_specific.size + @almost_chromosome_specific.size
end
def to_fasta
">Primer_#{snp_pos}_#{chromosome_specific.to_s}_#{almost_chromosome_specific.to_s}_#{crhomosome_specific_intron.to_s}_#{almost_crhomosome_specific_intron.to_s}\n#{sequence}\n"
end
end
end
Version data entries
33 entries across 33 versions & 2 rubygems