Contents

#
# = bio/db/fastq/fastq_to_biosequence.rb - Bio::Fastq to Bio::Sequence adapter module
#
# Copyright::   Copyright (C) 2009
#               Naohisa Goto <[e-mail]>
# License::     The Ruby License
#

require 'bio/sequence'
require 'bio/sequence/adapter'

# Internal use only. Normal users should not use this module.
#
# Bio::Fastq to Bio::Sequence adapter module.
# It is internally used in Bio::Fastq#to_biosequence.
#
module Bio::Sequence::Adapter::Fastq

  extend Bio::Sequence::Adapter

  private

  def_biosequence_adapter :seq

  def_biosequence_adapter :entry_id

  # primary accession
  def_biosequence_adapter :primary_accession do |orig|
    orig.entry_id
  end

  def_biosequence_adapter :definition

  def_biosequence_adapter :quality_scores

  def_biosequence_adapter :quality_score_type

  def_biosequence_adapter :error_probabilities

end #module Bio::Sequence::Adapter::Fastq

Version data entries

15 entries across 15 versions & 1 rubygems

Version	Path
bio-2.0.5	lib/bio/db/fastq/fastq_to_biosequence.rb
bio-2.0.4	lib/bio/db/fastq/fastq_to_biosequence.rb
bio-2.0.3	lib/bio/db/fastq/fastq_to_biosequence.rb
bio-2.0.2	lib/bio/db/fastq/fastq_to_biosequence.rb
bio-2.0.1	lib/bio/db/fastq/fastq_to_biosequence.rb
bio-2.0.0	lib/bio/db/fastq/fastq_to_biosequence.rb
bio-1.6.0.pre.20181210	lib/bio/db/fastq/fastq_to_biosequence.rb
bio-1.5.2	lib/bio/db/fastq/fastq_to_biosequence.rb
bio-1.5.1	lib/bio/db/fastq/fastq_to_biosequence.rb
bio-1.5.0	lib/bio/db/fastq/fastq_to_biosequence.rb
bio-1.4.3.0001	lib/bio/db/fastq/fastq_to_biosequence.rb
bio-1.4.3	lib/bio/db/fastq/fastq_to_biosequence.rb
bio-1.4.2	lib/bio/db/fastq/fastq_to_biosequence.rb
bio-1.4.1	lib/bio/db/fastq/fastq_to_biosequence.rb
bio-1.4.0	lib/bio/db/fastq/fastq_to_biosequence.rb