Sha256: d5384d2b53695c0f2d2b15071fcf6d618c6d1c95baf1be7f16af09e14295b500
Contents?: true
Size: 1.35 KB
Versions: 15
Compression:
Stored size: 1.35 KB
Contents
#!/usr/bin/env ruby
#
# pmfetch.rb - generate BibTeX format reference list by PubMed ID list
#
# Copyright (C) 2002 KATAYAMA Toshiaki <k@bioruby.org>
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
#
# $Id:$
#
require 'bio'
Bio::NCBI.default_email = 'staff@bioruby.org'
if ARGV[0] =~ /\A\-f/
ARGV.shift
form = ARGV.shift
else
form = 'bibtex'
end
ARGV.each do |id|
entries = Bio::PubMed.efetch(id)
if entries and entries.size == 1 then
entry = entries[0]
else
# dummy entry if not found or possibly incorrect result
entry = 'PMID- '
end
case form
when 'medline'
puts entry
else
puts Bio::MEDLINE.new(entry).reference.__send__(form.intern)
end
print "\n"
end
Version data entries
15 entries across 15 versions & 1 rubygems