Contents

#!/usr/bin/env ruby
require 'faraday'
require 'cri'

Signal.trap("PIPE", "EXIT")
Signal.trap("INT", "EXIT")

def get_uniprot_entry(arg)
  resp = Faraday.get("http://www.uniprot.org/uniprot/#{arg}.fasta")
  if resp.success?
    puts resp.body.lines.map(&:chomp)[1..-1].join("")
  end
end

if ARGV.empty?
  STDIN.each_line do |pept|
    get_uniprot_entry(pept.chomp)
  end
else
  ARGV.each do |pept|
    get_uniprot_entry(pept)
  end
end

Version data entries

7 entries across 7 versions & 1 rubygems

Version	Path
unipept-0.5.1	bin/uniprot
unipept-0.5.0	bin/uniprot
unipept-0.4.2	bin/uniprot
unipept-0.4.1	bin/uniprot
unipept-0.4.0	bin/uniprot
unipept-0.3.5	bin/uniprot
unipept-0.3.4	bin/uniprot