Sha256: cf2d142f58d5517ea48c5c9edd9f788ddd48a0907629b0eda89ce65ac00709fc
Contents?: true
Size: 1.34 KB
Versions: 41
Compression:
Stored size: 1.34 KB
Contents
#!/usr/bin/env ruby
require 'rbbt-util'
require 'rbbt/util/simpleopt'
$0 = "rbbt #{$previous_commands*""} #{ File.basename(__FILE__) }" if $previous_commands
options = SOPT.setup <<EOF
Produce a heatmap
$ rbbt stat heatmap [options] <filename.tsv> [file.png]
-h--help Print this help
-w--width* Image Width
-h--height* Image Height
-s--size* Image Size (Height and Width)
-l--logs Take logs
-p--positive single color heatmap (positive values
EOF
if options[:help]
if defined? rbbt_usage
rbbt_usage
else
puts SOPT.usage
end
exit 0
end
file, png = ARGV
raise "No file" if file.nil?
width, height, size, logs, positive = options.values_at :width, :height, :size, :logs, :positive
size = 800 if size.nil?
width = size if width.nil?
height = size if height.nil?
logs = false if logs.nil?
positive = false if positive.nil?
require 'rbbt/util/R'
if png
R.run <<-EOF
data = rbbt.tsv2matrix(rbbt.tsv('#{file}'))
rbbt.pheatmap('#{png}', data, width=#{ width }, height=#{ height }, take_log=#{R.ruby2R logs}, positive=#{R.ruby2R positive})
EOF
else
TmpFile.with_file(nil, :extension => 'png') do |png|
R.run <<-EOF
data = rbbt.tsv2matrix(rbbt.tsv('#{file}'))
rbbt.pheatmap('#{png}', data, width=#{ width }, height=#{ height }, take_log=#{R.ruby2R logs}, positive=#{R.ruby2R positive})
EOF
`op #{png}`
end
end
Version data entries
41 entries across 41 versions & 1 rubygems