Sha256: cded04a20043e72b243b6b70d9c1d58993701585af74fbb188ff2aef3b4c8510
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Versions: 13
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Contents
Feature: MAF output
In order to output modified MAF files or subsets of them
I want to be able to write out parsed MAF data
Scenario: Reproduce simple test data
Given a MAF source file "mm8_single.maf"
When I open it with a MAF reader
And open a new MAF writer
And write the header from the original MAF file
And write all the parsed blocks
Then the output should match, except whitespace, "mm8_single.maf"
Scenario: Reproduce longer test data
Given a MAF source file "mm8_chr7_tiny.maf"
When I open it with a MAF reader
And open a new MAF writer
And write the header from the original MAF file
And write all the parsed blocks
Then the output should match, except whitespace, "mm8_chr7_tiny.maf"
Scenario: Reproduce test data with i, e, q lines
Given a MAF source file "chr22_ieq.maf"
When I enable the :parse_extended parser option
And I enable the :parse_empty parser option
And I open it with a MAF reader
And open a new MAF writer
And write the header from the original MAF file
And write all the parsed blocks
Then the output should match, except whitespace, "chr22_ieq.maf"
Version data entries
13 entries across 13 versions & 1 rubygems