Contents

--- Makefile	2011-10-27 14:57:06.000000000 +0200
+++ ../Makefile-bioruby	2011-10-27 14:57:41.000000000 +0200
@@ -1,10 +1,11 @@
 CC=			gcc
-CFLAGS=		-g -Wall -O2 #-m64 #-arch ppc
+CFLAGS=		-g -Wall -O2 -m64 #-arch ppc
 DFLAGS=		-D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_USE_KNETFILE -D_CURSES_LIB=1
 KNETFILE_O=	knetfile.o
 LOBJS=		bgzf.o kstring.o bam_aux.o bam.o bam_import.o sam.o bam_index.o	\
 			bam_pileup.o bam_lpileup.o bam_md.o razf.o faidx.o bedidx.o \
-			$(KNETFILE_O) bam_sort.o sam_header.o bam_reheader.o kprobaln.o bam_cat.o
+			$(KNETFILE_O) bam_sort.o sam_header.o bam_reheader.o kprobaln.o bam_cat.o bam_plcmd.o \
+			bam2bcf.o bam2bcf_indel.o sample.o bcftools/bcf.o bcftools/bcfutils.o errmod.o bcftools/fet.o
 AOBJS=		bam_tview.o bam_plcmd.o sam_view.o	\
 			bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o	\
 			bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o \
@@ -81,8 +82,8 @@
 dylib:
 		@$(MAKE) cleanlocal; \
 		case `uname` in \
-			Linux) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam.so.1-local;; \
-			Darwin) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam.1.dylib-local;; \
+			Linux) $(MAKE) CFLAGS="$(CFLAGS)  -fPIC" libbam.so.1-local;; \
+			Darwin) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam.1.dylib-local ;; \
 			*) echo 'Unknown OS';; \
 		esac
 

Version data entries

3 entries across 3 versions & 1 rubygems

Version	Path
bio-samtools-0.4.1	ext/Makefile-bioruby.patch
bio-samtools-0.4.0	ext/Makefile-bioruby.patch
bio-samtools-0.3.2	ext/Makefile-bioruby.patch