# Generated by juwelier # DO NOT EDIT THIS FILE DIRECTLY # Instead, edit Juwelier::Tasks in Rakefile, and run 'rake gemspec' # -*- encoding: utf-8 -*- # stub: bio-polyploid-tools 0.9.5 ruby lib Gem::Specification.new do |s| s.name = "bio-polyploid-tools".freeze s.version = "0.9.5" s.required_rubygems_version = Gem::Requirement.new(">= 0".freeze) if s.respond_to? :required_rubygems_version= s.require_paths = ["lib".freeze] s.authors = ["Ricardo H. Ramirez-Gonzalez".freeze] s.date = "2018-08-20" s.description = "Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat".freeze s.email = "ricardo.ramirez-gonzalez@jic.ac.uk".freeze s.executables = ["bfr.rb".freeze, "blast_triads.rb".freeze, "blast_triads_promoters.rb".freeze, "count_variations.rb".freeze, "filter_blat_by_target_coverage.rb".freeze, "filter_exonerate_by_identity.rb".freeze, "find_best_blat_hit.rb".freeze, "find_best_exonerate.rb".freeze, "find_homoeologue_variations.rb".freeze, "get_longest_hsp_blastx_triads.rb".freeze, "hexaploid_primers.rb".freeze, "homokaryot_primers.rb".freeze, "mafft_triads.rb".freeze, "mafft_triads_promoters.rb".freeze, "map_markers_to_contigs.rb".freeze, "markers_in_region.rb".freeze, "mask_triads.rb".freeze, "polymarker.rb".freeze, "polymarker_capillary.rb".freeze, "snp_position_to_polymarker.rb".freeze, "snps_between_bams.rb".freeze, "tag_stats.rb".freeze, "vcfLineToTable.rb".freeze] s.extra_rdoc_files = [ "README", "README.md" ] s.files = [ ".travis.yml", "Gemfile", "README", "README.md", "Rakefile", "VERSION", "bin/bfr.rb", "bin/blast_triads.rb", "bin/blast_triads_promoters.rb", "bin/count_variations.rb", "bin/filter_blat_by_target_coverage.rb", "bin/filter_exonerate_by_identity.rb", "bin/find_best_blat_hit.rb", "bin/find_best_exonerate.rb", "bin/find_homoeologue_variations.rb", "bin/get_longest_hsp_blastx_triads.rb", "bin/hexaploid_primers.rb", "bin/homokaryot_primers.rb", "bin/mafft_triads.rb", "bin/mafft_triads_promoters.rb", "bin/map_markers_to_contigs.rb", "bin/markers_in_region.rb", "bin/mask_triads.rb", "bin/polymarker.rb", "bin/polymarker_capillary.rb", "bin/snp_position_to_polymarker.rb", "bin/snps_between_bams.rb", "bin/tag_stats.rb", "bin/vcfLineToTable.rb", "bio-polyploid-tools.gemspec", "conf/defaults.rb", "conf/primer3_config/dangle.dh", "conf/primer3_config/dangle.ds", "conf/primer3_config/interpretations/dangle_i.dh", "conf/primer3_config/interpretations/dangle_i.ds", 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"test/data/chr4D_C14473543T/chr4D_C14473543T.fa", "test/data/headerMergeed.txt", "test/data/headerS2238015", "test/data/mergedLibs.bam", "test/data/mergedLibsReheader.bam", "test/data/mergedLibsSorted.bam", "test/data/mergedLibsSorted.bam.bai", "test/data/patological_cases5D.csv", "test/data/primer_3_input_header_test", "test/data/short_primer_design_test.csv", "test/data/test_from_mutant.csv", "test/data/test_iselect.csv", "test/data/test_iselect_reference.fa", "test/data/test_iselect_reference.fa.fai", "test/data/test_primer3_error.csv", "test/data/test_primer3_error_contigs.fa", "test/test_bfr.rb", "test/test_blast.rb", "test/test_exon_container.rb", "test/test_exonearate.rb", "test/test_snp_parsing.rb", "test/test_wrong_selection.sh" ] s.homepage = "http://github.com/tgac/bioruby-polyploid-tools".freeze s.licenses = ["MIT".freeze] s.rubygems_version = "2.7.4".freeze s.summary = "Tool to work with polyploids, NGS and molecular biology".freeze if s.respond_to? :specification_version then s.specification_version = 4 if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then s.add_runtime_dependency(%q.freeze, [">= 1.5.1"]) s.add_runtime_dependency(%q.freeze, [">= 2.6.2"]) s.add_runtime_dependency(%q.freeze, [">= 0"]) s.add_runtime_dependency(%q.freeze, [">= 2.5.2"]) s.add_development_dependency(%q.freeze, [">= 2.10"]) s.add_development_dependency(%q.freeze, [">= 0"]) s.add_development_dependency(%q.freeze, [">= 0"]) else s.add_dependency(%q.freeze, [">= 1.5.1"]) s.add_dependency(%q.freeze, [">= 2.6.2"]) s.add_dependency(%q.freeze, [">= 0"]) s.add_dependency(%q.freeze, [">= 2.5.2"]) s.add_dependency(%q.freeze, [">= 2.10"]) s.add_dependency(%q.freeze, [">= 0"]) s.add_dependency(%q.freeze, [">= 0"]) end else s.add_dependency(%q.freeze, [">= 1.5.1"]) s.add_dependency(%q.freeze, [">= 2.6.2"]) s.add_dependency(%q.freeze, [">= 0"]) s.add_dependency(%q.freeze, [">= 2.5.2"]) s.add_dependency(%q.freeze, [">= 2.10"]) s.add_dependency(%q.freeze, [">= 0"]) s.add_dependency(%q.freeze, [">= 0"]) end end