# frozen_string_literal: true module Bolognese module Readers module CrossrefReader # CrossRef types from https://api.crossref.org/types CONTACT_EMAIL = "tech@datacite.org" def get_crossref(id: nil, **options) return { "string" => nil, "state" => "not_found" } unless id.present? doi = doi_from_url(id) url = "http://www.crossref.org/openurl/?id=doi:#{doi}&noredirect=true&pid=#{CONTACT_EMAIL}&format=unixref" response = Maremma.get(url, accept: "text/xml", raw: true) string = response.body.fetch("data", nil) string = Nokogiri::XML(string, nil, 'UTF-8', &:noblanks).to_s if string.present? { "string" => string } end def read_crossref(string: nil, **options) if string.present? m = Maremma.from_xml(string).dig("doi_records", "doi_record") || {} meta = m.dig("crossref", "error").nil? ? m : {} else meta = {} end # model should be one of book, conference, database, dissertation, journal, peer_review, posted_content, # report-paper, sa_component, standard model = meta.dig("crossref").to_h.keys.first additional_type = nil bibliographic_metadata = {} program_metadata = {} journal_metadata = nil journal_issue = {} publisher = nil case model when "book" book_metadata = meta.dig("crossref", "book", "book_metadata") book_series_metadata = meta.dig("crossref", "book", "book_series_metadata") book_set_metadata = meta.dig("crossref", "book", "book_set_metadata") bibliographic_metadata = meta.dig("crossref", "book", "content_item").to_h additional_type = bibliographic_metadata.fetch("component_type", nil) ? "book-" + bibliographic_metadata.fetch("component_type") : "book" publisher = book_metadata.dig("publisher", "publisher_name") when "conference" event_metadata = meta.dig("crossref", "conference", "event_metadata") || {} bibliographic_metadata = meta.dig("crossref", "conference", "conference_paper").to_h when "journal" journal_metadata = meta.dig("crossref", "journal", "journal_metadata") || {} bibliographic_metadata = meta.dig("crossref", "journal", "journal_article").to_h program_metadata = bibliographic_metadata.dig("crossmark", "custom_metadata", "program") || bibliographic_metadata.dig("program") journal_issue = meta.dig("crossref", "journal", "journal_issue") || {} journal_article = meta.dig("crossref", "journal", "journal_article") || {} additional_type = if journal_article.present? "journal_article" elsif journal_issue.present? "journal_issue" else "journal" end when "posted_content" bibliographic_metadata = meta.dig("crossref", "posted_content").to_h publisher = bibliographic_metadata.dig("institution", "institution_name") when "sa_component" bibliographic_metadata = meta.dig("crossref", "sa_component", "component_list", "component").to_h publisher = "(:unav)" end additional_type = (additional_type || model).to_s.underscore.camelize.presence type = Bolognese::Utils::CR_TO_SO_TRANSLATIONS[additional_type] || "ScholarlyArticle" doi = bibliographic_metadata.dig("doi_data", "doi").to_s.downcase.presence #|| doi_from_url(options[:id]) # Crossref servers run on Eastern Time Time.zone = 'Eastern Time (US & Canada)' date_modified = Time.zone.parse(meta.fetch("timestamp", "2018-01-01")).utc.iso8601 state = meta.present? ? "findable" : "not_found" { "id" => normalize_doi(doi), "type" => type, "additional_type" => additional_type, "citeproc_type" => Bolognese::Utils::CR_TO_CP_TRANSLATIONS[additional_type] || "article-journal", "bibtex_type" => Bolognese::Utils::CR_TO_BIB_TRANSLATIONS[additional_type] || "misc", "ris_type" => Bolognese::Utils::CR_TO_RIS_TRANSLATIONS[additional_type] || "JOUR", "resource_type_general" => Bolognese::Utils::SO_TO_DC_TRANSLATIONS[type], "doi" => doi, "b_url" => bibliographic_metadata.dig("doi_data", "resource"), "title" => parse_attributes(bibliographic_metadata.dig("titles", "title")), "alternate_name" => crossref_alternate_name(bibliographic_metadata), "author" => crossref_people(bibliographic_metadata, "author"), "editor" => crossref_people(bibliographic_metadata, "editor"), "funding" => crossref_funding_reference(program_metadata), "publisher" => publisher, "service_provider" => "Crossref", "is_part_of" => crossref_is_part_of(journal_metadata), "references" => crossref_references(bibliographic_metadata), "date_published" => crossref_date_published(bibliographic_metadata), "date_modified" => date_modified, "volume" => journal_issue.dig("journal_volume", "volume"), "issue" => journal_issue.dig("issue"), "first_page" => bibliographic_metadata.dig("pages", "first_page"), "last_page" => bibliographic_metadata.dig("pages", "last_page"), "description" => crossref_description(bibliographic_metadata), "license" => crossref_license(program_metadata), "b_version" => nil, "keywords" => nil, "language" => nil, "content_size" => nil, "schema_version" => nil, "state" => state } end def crossref_alternate_name(bibliographic_metadata) if bibliographic_metadata.fetch("publisher_item", nil).present? parse_attributes(bibliographic_metadata.dig("publisher_item", "item_number")) else parse_attributes(bibliographic_metadata.fetch("item_number", nil)) end end def crossref_description(bibliographic_metadata) abstract = Array.wrap(bibliographic_metadata.dig("abstract")).map do |r| { "type" => "Abstract", "text" => sanitize(parse_attributes(r, content: 'p')) }.compact end description = Array.wrap(bibliographic_metadata.dig("description")).map do |r| if abstract.present? { "text" => sanitize(parse_attributes(r)) }.compact else sanitize(parse_attributes(r)) end end (abstract + description).unwrap end def crossref_license(program_metadata) access_indicator = Array.wrap(program_metadata).find { |m| m["name"] == "AccessIndicators" } if access_indicator.present? Array.wrap(access_indicator["license_ref"]).map do |license| { "id" => normalize_url(parse_attributes(license)) } end.uniq.unwrap else nil end end def crossref_people(bibliographic_metadata, contributor_role) person = bibliographic_metadata.dig("contributors", "person_name") Array.wrap(person).select { |a| a["contributor_role"] == contributor_role }.map do |a| { "type" => "Person", "id" => parse_attributes(a["ORCID"]), "name" => [a["given_name"], a["surname"]].join(" "), "givenName" => a["given_name"], "familyName" => a["surname"] }.compact end.unwrap end def crossref_funding_reference(program_metadata) fundref = Array.wrap(program_metadata).find { |a| a["name"] == "fundref" } || {} Array.wrap(fundref.fetch("assertion", [])).select { |a| a["name"] == "fundgroup" }.map do |f| f = Array.wrap(f.fetch("assertion", nil)).first funder = { "type" => "Organization", "id" => normalize_id(f.dig("assertion", "__content__")), "name" => f.dig("__content__").strip }.compact if f["awardNumber"].present? || f["awardTitle"].present? { "type" => "Award", "name" => f.fetch("awardTitle", nil), "identifier" => f.dig("awardNumber", "__content__"), "url" => f.dig("awardNumber", "awardURI"), "funder" => funder } else funder end end.unwrap end # def datacite_funding_reference(meta) # Array.wrap(meta.dig("fundingReferences", "fundingReference")).map do |f| # funder_id = parse_attributes(f["funderIdentifier"]) # funder = { "type" => "Organization", # "id" => normalize_id(funder_id), # "name" => f["funderName"] }.compact # if f["awardNumber"].present? || f["awardTitle"].present? # { "type" => "Award", # "name" => f.fetch("awardTitle", nil), # "identifier" => f.dig("awardNumber", "__content__"), # "url" => f.dig("awardNumber", "awardURI"), # "funder" => funder } # else # funder # end # end.uniq # end def crossref_date_published(bibliographic_metadata) pub_date = Array.wrap(bibliographic_metadata.fetch("publication_date", nil)).presence || Array.wrap(bibliographic_metadata.fetch("acceptance_date", nil)) if pub_date.present? get_date_from_parts(pub_date.first["year"], pub_date.first["month"], pub_date.first["day"]) else nil end end def crossref_is_part_of(model_metadata) if model_metadata.present? { "type" => "Periodical", "title" => model_metadata["full_title"], "issn" => parse_attributes(model_metadata.fetch("issn", nil), first: true) }.compact else nil end end def crossref_references(bibliographic_metadata) refs = bibliographic_metadata.dig("citation_list", "citation") Array.wrap(refs).select { |a| a["doi"].present? }.map do |c| { "type" => "CreativeWork", "id" => normalize_id(parse_attributes(c["doi"])), "title" => c["article_title"] }.compact end.unwrap end end end end