Contents

# print_annotation: print all annotations in the given file

require 'simple_bioc'

if ARGF.argv.size < 1
  puts "usage: ruby print_annotation.rb {filepath}"
  exit
end

collection = SimpleBioC::from_xml(ARGF.argv[0])
collection.documents.each do |d|
  d.passages.each do |p|
    p.sentences.each do |s|
      s.annotations.each{|a| puts "#{d} #{a}"}
    end
    p.annotations.each{|a| puts "#{d} #{a}"}
  end
end

Version data entries

23 entries across 23 versions & 1 rubygems

Version	Path
simple_bioc-0.0.24	samples/print_annotation.rb
simple_bioc-0.0.23	samples/print_annotation.rb
simple_bioc-0.0.22	samples/print_annotation.rb
simple_bioc-0.0.21	samples/print_annotation.rb
simple_bioc-0.0.20	samples/print_annotation.rb
simple_bioc-0.0.19	samples/print_annotation.rb
simple_bioc-0.0.18	samples/print_annotation.rb
simple_bioc-0.0.17	samples/print_annotation.rb
simple_bioc-0.0.16	samples/print_annotation.rb
simple_bioc-0.0.15	samples/print_annotation.rb
simple_bioc-0.0.14	samples/print_annotation.rb
simple_bioc-0.0.13	samples/print_annotation.rb
simple_bioc-0.0.12	samples/print_annotation.rb
simple_bioc-0.0.11	samples/print_annotation.rb
simple_bioc-0.0.10	samples/print_annotation.rb
simple_bioc-0.0.9	samples/print_annotation.rb
simple_bioc-0.0.8	samples/print_annotation.rb
simple_bioc-0.0.7	samples/print_annotation.rb
simple_bioc-0.0.6	samples/print_annotation.rb
simple_bioc-0.0.5	samples/print_annotation.rb