--- !ruby/object:Gem::Specification
name: viral_seq
version: !ruby/object:Gem::Version
  version: 0.3.1
platform: ruby
authors:
- Shuntai Zhou
- Michael Clark
autorequire: 
bindir: exe
cert_chain: []
date: 2019-06-21 00:00:00.000000000 Z
dependencies:
- !ruby/object:Gem::Dependency
  name: bundler
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '2.0'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '2.0'
- !ruby/object:Gem::Dependency
  name: rake
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '10.0'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '10.0'
- !ruby/object:Gem::Dependency
  name: rspec
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '3.0'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '3.0'
- !ruby/object:Gem::Dependency
  name: muscle_bio
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '0.4'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '0.4'
description: Specifically for Primer-ID sequencing and HIV drug resistance analysis.
email:
- shuntai.zhou@gmail.com
- clarkmu@gmail.com
executables: []
extensions: []
extra_rdoc_files: []
files:
- ".gitignore"
- ".rspec"
- ".travis.yml"
- CODE_OF_CONDUCT.md
- Gemfile
- Gemfile.lock
- LICENSE.txt
- README.md
- Rakefile
- bin/console
- bin/setup
- lib/viral_seq.rb
- lib/viral_seq/a3g.rb
- lib/viral_seq/fasta.rb
- lib/viral_seq/hcv_dr.rb
- lib/viral_seq/locator.rb
- lib/viral_seq/math.rb
- lib/viral_seq/misc.rb
- lib/viral_seq/muscle.rb
- lib/viral_seq/nt_variation.rb
- lib/viral_seq/poisson_cutoff.rb
- lib/viral_seq/refseq.rb
- lib/viral_seq/sdrm_core.rb
- lib/viral_seq/sequence.rb
- lib/viral_seq/tcs_core.rb
- lib/viral_seq/version.rb
- viral_seq.gemspec
homepage: https://github.com/ViralSeq/viral_seq
licenses:
- MIT
metadata: {}
post_install_message: Thanks for installing!
rdoc_options: []
require_paths:
- lib
required_ruby_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">="
    - !ruby/object:Gem::Version
      version: '0'
required_rubygems_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">="
    - !ruby/object:Gem::Version
      version: '0'
requirements:
- MUSCLE (http://www.drive5.com/muscle) required for some functions
- R required for some functions
rubygems_version: 3.0.3
signing_key: 
specification_version: 4
summary: A Ruby Gem containing bioinformatics tools for processing viral NGS data.
test_files: []