# frozen_string_literal: true require 'spec_helper' describe Briard::Metadata, vcr: true do context 'write metadata as datacite xml' do it 'with data citation' do input = '10.7554/eLife.01567' subject = described_class.new(input: input, from: 'crossref') expect(subject.valid?).to be true datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('resourceType', 'resourceTypeGeneral')).to eq('JournalArticle') expect(datacite.dig('titles', 'title')).to eq('Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth') expect(datacite.dig('relatedIdentifiers', 'relatedIdentifier').length).to eq(28) expect(datacite.dig('relatedIdentifiers', 'relatedIdentifier').first).to eq('relatedIdentifierType' => 'ISSN', 'relationType' => 'IsPartOf', '__content__' => '2050-084X', 'resourceTypeGeneral' => 'Collection') expect(datacite.dig('relatedIdentifiers', 'relatedIdentifier')[1]).to eq('relatedIdentifierType' => 'DOI', 'relationType' => 'References', '__content__' => '10.1038/nature02100') expect(datacite.dig('rightsList', 'rights')).to eq('rightsURI' => 'https://creativecommons.org/licenses/by/3.0/legalcode', 'rightsIdentifier' => 'cc-by-3.0', 'rightsIdentifierScheme' => 'SPDX', 'schemeURI' => 'https://spdx.org/licenses/', '__content__' => 'Creative Commons Attribution 3.0 Unported') expect(datacite.dig('fundingReferences', 'fundingReference').count).to eq(4) expect(datacite.dig('fundingReferences', 'fundingReference').last).to eq('funderName' => 'University of Lausanne', 'funderIdentifier' => { 'funderIdentifierType' => 'Crossref Funder ID', '__content__' => 'https://doi.org/10.13039/501100006390' }) end it 'with ORCID ID' do input = 'https://doi.org/10.1155/2012/291294' subject = described_class.new(input: input, from: 'crossref') expect(subject.valid?).to be true datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('resourceType', 'resourceTypeGeneral')).to eq('JournalArticle') expect(datacite.dig('creators', 'creator').count).to eq(7) expect(datacite.dig('creators', 'creator')[2]).to eq('creatorName' => { '__content__' => 'Hernandez, Beatriz', 'nameType' => 'Personal' }, 'familyName' => 'Hernandez', 'givenName' => 'Beatriz', 'affiliation' => [ 'War Related Illness and Injury Study Center (WRIISC) and Mental Illness Research Education and Clinical Center (MIRECC), Department of Veterans Affairs, Palo Alto, CA 94304, USA', 'Department of Psychiatry and Behavioral Sciences, Stanford University School of Medicine, Stanford, CA 94304, USA' ], 'nameIdentifier' => { 'nameIdentifierScheme' => 'ORCID', 'schemeURI' => 'https://orcid.org', '__content__' => 'https://orcid.org/0000-0003-2043-4925' }) end it 'with editor' do input = 'https://doi.org/10.1371/journal.pone.0000030' subject = described_class.new(input: input, from: 'crossref') expect(subject.valid?).to be true datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('contributors', 'contributor')).to eq( 'contributorName' => { '__content__' => 'Janbon, Guilhem', 'nameType' => 'Personal' }, 'contributorType' => 'Editor', 'familyName' => 'Janbon', 'givenName' => 'Guilhem' ) end it 'Crossref DOI' do input = "#{fixture_path}crossref.bib" subject = described_class.new(input: input, from: 'bibtex') expect(subject.valid?).to be true datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('resourceType', 'resourceTypeGeneral')).to eq('JournalArticle') expect(datacite.dig('titles', 'title')).to eq('Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth') expect(datacite.dig('descriptions', 'description').first).to eq('__content__' => 'eLife, 3', 'descriptionType' => 'SeriesInformation') expect(datacite.dig('descriptions', 'description', 1, '__content__')).to start_with('Among various advantages, their small size makes model organisms preferred subjects of investigation.') expect(datacite.dig('creators', 'creator').count).to eq(5) expect(datacite.dig('creators', 'creator').first).to eq( 'creatorName' => { '__content__' => 'Sankar, Martial', 'nameType' => 'Personal' }, 'familyName' => 'Sankar', 'givenName' => 'Martial' ) end it 'BlogPosting Citeproc JSON' do input = "#{fixture_path}citeproc.json" subject = described_class.new(input: input, from: 'citeproc') expect(subject.valid?).to be true datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('resourceType', 'resourceTypeGeneral')).to eq('Text') expect(datacite.dig('titles', 'title')).to eq('Eating your own Dog Food') expect(datacite.dig('descriptions', 'description').first).to eq('__content__' => 'DataCite Blog', 'descriptionType' => 'SeriesInformation') expect(datacite.dig('descriptions', 'description', 1, '__content__')).to start_with('Eating your own dog food') expect(datacite.dig('creators', 'creator')).to eq("creatorName"=>{"__content__"=>"Fenner, Martin", "nameType"=>"Personal"}, "familyName"=>"Fenner", "givenName"=>"Martin") end it 'rdataone' do input = "#{fixture_path}codemeta.json" subject = described_class.new(input: input, from: 'codemeta') expect(subject.valid?).to be true datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('titles', 'title')).to eq('R Interface to the DataONE REST API') expect(datacite.dig('creators', 'creator')).to eq([{ 'affiliation' => 'NCEAS', 'creatorName' => { '__content__' => 'Jones, Matt', 'nameType' => 'Personal' }, 'givenName' => 'Matt', 'familyName' => 'Jones', 'nameIdentifier' => { 'nameIdentifierScheme' => 'ORCID', 'schemeURI' => 'https://orcid.org', '__content__' => 'https://orcid.org/0000-0003-0077-4738' } }, { 'affiliation' => 'NCEAS', 'creatorName' => { '__content__' => 'Slaughter, Peter', 'nameType' => 'Personal' }, 'givenName' => 'Peter', 'familyName' => 'Slaughter', 'nameIdentifier' => { 'nameIdentifierScheme' => 'ORCID', 'schemeURI' => 'https://orcid.org', '__content__' => 'https://orcid.org/0000-0002-2192-403X' } }, { 'creatorName' => { '__content__' => 'University of California, Santa Barbara', 'nameType' => 'Organizational' } }]) expect(datacite.fetch('version')).to eq('2.0.0') end it 'rdataone and codemeta_v2' do input = "#{fixture_path}codemeta_v2.json" subject = described_class.new(input: input, from: 'codemeta') expect(subject.valid?).to be true datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('titles', 'title')).to eq('R Interface to the DataONE REST API') expect(datacite.dig('creators', 'creator')).to eq([{ 'affiliation' => 'NCEAS', 'creatorName' => { '__content__' => 'Jones, Matt', 'nameType' => 'Personal' }, 'givenName' => 'Matt', 'familyName' => 'Jones', 'nameIdentifier' => { 'nameIdentifierScheme' => 'ORCID', 'schemeURI' => 'https://orcid.org', '__content__' => 'https://orcid.org/0000-0003-0077-4738' } }, { 'affiliation' => 'NCEAS', 'creatorName' => { '__content__' => 'Slaughter, Peter', 'nameType' => 'Personal' }, 'givenName' => 'Peter', 'familyName' => 'Slaughter', 'nameIdentifier' => { 'nameIdentifierScheme' => 'ORCID', 'schemeURI' => 'https://orcid.org', '__content__' => 'https://orcid.org/0000-0002-2192-403X' } }, { 'creatorName' => { '__content__' => 'University of California, Santa Barbara', 'nameType' => 'Organizational' } }]) expect(datacite.fetch('version')).to eq('2.0.0') end it 'maremma' do input = 'https://github.com/datacite/maremma' subject = described_class.new(input: input, from: 'codemeta') expect(subject.valid?).to be true datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('titles', 'title')).to eq('Maremma: a Ruby library for simplified network calls') expect(datacite.dig('creators', 'creator')).to eq('affiliation' => 'DataCite', 'creatorName' => { '__content__' => 'Fenner, Martin', 'nameType' => 'Personal' }, 'givenName' => 'Martin', 'familyName' => 'Fenner', 'nameIdentifier' => { '__content__' => 'https://orcid.org/0000-0003-0077-4738', 'nameIdentifierScheme' => 'ORCID', 'schemeURI' => 'https://orcid.org' }) end it 'with version' do input = 'https://doi.org/10.5281/zenodo.28518' subject = described_class.new(input: input, from: 'datacite', regenerate: true) expect(subject.valid?).to be true expect(subject.id).to eq('https://doi.org/10.5281/zenodo.28518') expect(subject.identifiers).to eq([{ 'identifier' => 'https://zenodo.org/record/28518', 'identifierType' => 'URL' }]) expect(subject.types).to eq('bibtex' => 'misc', 'citeproc' => 'article', 'resourceTypeGeneral' => 'Software', 'ris' => 'COMP', 'schemaOrg' => 'SoftwareSourceCode') expect(subject.creators.length).to eq(2) expect(subject.creators.first).to eq('affiliation' => [{ 'name' => 'University of Washington' }], 'familyName' => 'Vanderplas', 'givenName' => 'Jake', 'name' => 'Vanderplas, Jake', 'nameType' => 'Personal') expect(subject.titles).to eq([{ 'title' => 'Supersmoother: Minor Bug Fix Release' }]) expect(subject.rights_list).to eq([{ 'rights' => 'Open Access', 'rightsUri' => 'info:eu-repo/semantics/openAccess' }]) expect(subject.dates).to eq([{ 'date' => '2015-08-19', 'dateType' => 'Issued' }]) expect(subject.publication_year).to eq('2015') expect(subject.version_info).to eq('v0.3.2') expect(subject.publisher).to eq('Zenodo') expect(subject.agency).to eq('DataCite') expect(subject.schema_version).to eq('http://datacite.org/schema/kernel-4') expect(subject.datacite).to include('v0.3.2') end it 'Text pass-thru' do input = 'https://doi.org/10.23640/07243.5153971' subject = described_class.new(input: input, from: 'datacite') expect(subject.valid?).to be true expect(subject.id).to eq('https://doi.org/10.23640/07243.5153971') expect(subject.types).to eq('bibtex' => 'article', 'citeproc' => 'article-journal', 'resourceType' => 'Paper', 'resourceTypeGeneral' => 'Text', 'ris' => 'RPRT', 'schemaOrg' => 'ScholarlyArticle') expect(subject.creators.length).to eq(20) expect(subject.creators.first).to eq('nameType' => 'Personal', 'familyName' => 'Paglione', 'givenName' => 'Laura', 'nameIdentifiers' => [{ 'nameIdentifier' => 'https://orcid.org/0000-0003-3188-6273', 'nameIdentifierScheme' => 'ORCID', 'schemeUri' => 'https://orcid.org' }], 'name' => 'Paglione, Laura') expect(subject.titles).to eq([{ 'title' => 'Recommendation of: ORCID Works Metadata Working Group' }]) expect(subject.rights_list).to eq([{ 'rights' => 'Creative Commons Zero v1.0 Universal', 'rightsIdentifier' => 'cc0-1.0', 'rightsIdentifierScheme' => 'SPDX', 'rightsUri' => 'https://creativecommons.org/publicdomain/zero/1.0/legalcode', 'schemeUri' => 'https://spdx.org/licenses/' }]) expect(subject.dates).to eq([{ 'date' => '2017-06-28', 'dateType' => 'Created' }, { 'date' => '2017-06-28', 'dateType' => 'Updated' }, { 'date' => '2017', 'dateType' => 'Issued' }]) expect(subject.publication_year).to eq('2017') expect(subject.publisher).to eq('Figshare') expect(subject.subjects).to eq([{ 'subject' => 'information systems' }, { 'schemeUri' => 'http://www.oecd.org/science/inno/38235147.pdf', 'subject' => 'FOS: Computer and information sciences', 'subjectScheme' => 'Fields of Science and Technology (FOS)' }]) expect(subject.agency).to eq('DataCite') expect(subject.schema_version).to eq('http://datacite.org/schema/kernel-3') expect(subject.datacite).to end_with('') end it 'Text pass-thru with doi in options' do input = 'https://doi.org/10.23640/07243.5153971' subject = described_class.new(input: input, from: 'datacite', doi: '10.5072/07243.5153971') expect(subject.valid?).to be true expect(subject.id).to eq('https://doi.org/10.5072/07243.5153971') expect(subject.types).to eq('bibtex' => 'article', 'citeproc' => 'article-journal', 'resourceType' => 'Paper', 'resourceTypeGeneral' => 'Text', 'ris' => 'RPRT', 'schemaOrg' => 'ScholarlyArticle') expect(subject.creators.length).to eq(20) expect(subject.creators.first).to eq('nameType' => 'Personal', 'familyName' => 'Paglione', 'givenName' => 'Laura', 'name' => 'Paglione, Laura', 'nameIdentifiers' => [{ 'nameIdentifier' => 'https://orcid.org/0000-0003-3188-6273', 'nameIdentifierScheme' => 'ORCID', 'schemeUri' => 'https://orcid.org' }]) expect(subject.titles).to eq([{ 'title' => 'Recommendation of: ORCID Works Metadata Working Group' }]) expect(subject.rights_list).to eq([{ 'rights' => 'Creative Commons Zero v1.0 Universal', 'rightsIdentifier' => 'cc0-1.0', 'rightsIdentifierScheme' => 'SPDX', 'rightsUri' => 'https://creativecommons.org/publicdomain/zero/1.0/legalcode', 'schemeUri' => 'https://spdx.org/licenses/' }]) expect(subject.dates).to eq([{ 'date' => '2017-06-28', 'dateType' => 'Created' }, { 'date' => '2017-06-28', 'dateType' => 'Updated' }, { 'date' => '2017', 'dateType' => 'Issued' }]) expect(subject.publication_year).to eq('2017') expect(subject.publisher).to eq('Figshare') expect(subject.subjects).to eq([{ 'subject' => 'information systems' }, { 'schemeUri' => 'http://www.oecd.org/science/inno/38235147.pdf', 'subject' => 'FOS: Computer and information sciences', 'subjectScheme' => 'Fields of Science and Technology (FOS)' }]) expect(subject.agency).to eq('DataCite') expect(subject.schema_version).to eq('http://datacite.org/schema/kernel-3') expect(subject.datacite).to end_with('') end it 'Dataset in schema 4.0' do input = 'https://doi.org/10.5061/DRYAD.8515' subject = described_class.new(input: input, from: 'datacite', regenerate: true) expect(subject.valid?).to be true expect(subject.types).to eq('bibtex' => 'misc', 'citeproc' => 'dataset', 'resourceType' => 'dataset', 'resourceTypeGeneral' => 'Dataset', 'ris' => 'DATA', 'schemaOrg' => 'Dataset') expect(subject.creators.length).to eq(8) expect(subject.creators.first).to eq('nameType' => 'Personal', 'name' => 'Ollomo, Benjamin', 'givenName' => 'Benjamin', 'familyName' => 'Ollomo', 'affiliation' => [{ 'affiliationIdentifier' => 'https://ror.org/01wyqb997', 'affiliationIdentifierScheme' => 'ROR', 'name' => 'Centre International de Recherches Médicales de Franceville' }]) expect(subject.titles).to eq([{ 'title' => 'Data from: A new malaria agent in African hominids.' }]) expect(subject.id).to eq('https://doi.org/10.5061/dryad.8515') expect(subject.rights_list).to eq([{ 'rights' => 'Creative Commons Zero v1.0 Universal', 'rightsIdentifier' => 'cc0-1.0', 'rightsIdentifierScheme' => 'SPDX', 'rightsUri' => 'https://creativecommons.org/publicdomain/zero/1.0/legalcode', 'schemeUri' => 'https://spdx.org/licenses/' }]) expect(subject.dates).to eq([{ 'date' => '2011-02-01T17:22:41Z', 'dateType' => 'Available' }, { 'date' => '2011', 'dateType' => 'Issued' }]) expect(subject.publication_year).to eq('2011') expect(subject.related_identifiers.length).to eq(1) expect(subject.related_identifiers.last).to eq('relatedIdentifier' => '10.1371/journal.ppat.1000446', 'relatedIdentifierType' => 'DOI', 'relationType' => 'IsCitedBy') expect(subject.publisher).to eq('Dryad') expect(subject.agency).to eq('DataCite') expect(subject.schema_version).to eq('http://datacite.org/schema/kernel-4') datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.fetch('xsi:schemaLocation', '').split.first).to eq('http://datacite.org/schema/kernel-4') end it 'Affiliation' do input = "#{fixture_path}datacite-example-geolocation-2.xml" doi = '10.6071/Z7WC73' subject = described_class.new(input: input, from: 'datacite', regenerate: true) expect(subject.valid?).to be true expect(subject.types).to eq('bibtex' => 'misc', 'citeproc' => 'dataset', 'resourceType' => 'dataset', 'resourceTypeGeneral' => 'Dataset', 'ris' => 'DATA', 'schemaOrg' => 'Dataset') expect(subject.creators.length).to eq(6) expect(subject.creators.first).to eq('affiliation' => [{ 'name' => 'UC Merced' }, { 'name' => 'NSF' }], 'familyName' => 'Bales', 'givenName' => 'Roger', 'name' => 'Bales, Roger', 'nameType' => 'Personal') expect(subject.titles).to eq([{ 'title' => 'Southern Sierra Critical Zone Observatory (SSCZO), Providence Creek meteorological data, soil moisture and temperature, snow depth and air temperature' }]) expect(subject.id).to eq('https://doi.org/10.6071/z7wc73') expect(subject.rights_list).to eq([{ 'rights' => 'Creative Commons Attribution 4.0 International', 'rightsIdentifier' => 'cc-by-4.0', 'rightsIdentifierScheme' => 'SPDX', 'rightsUri' => 'https://creativecommons.org/licenses/by/4.0/legalcode', 'schemeUri' => 'https://spdx.org/licenses/' }]) expect(subject.dates).to eq([{ 'date' => '2014-10-17', 'dateType' => 'Updated' }, { 'date' => '2016-03-14T17:02:02Z', 'dateType' => 'Available' }, { 'date' => '2013', 'dateType' => 'Issued' }]) expect(subject.publication_year).to eq('2013') expect(subject.publisher).to eq('UC Merced') expect(subject.agency).to eq('DataCite') expect(subject.schema_version).to eq('http://datacite.org/schema/kernel-4') datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.fetch('xsi:schemaLocation', '').split.first).to eq('http://datacite.org/schema/kernel-4') expect(datacite.dig('creators', 'creator', 0, 'affiliation')).to eq(['UC Merced', 'NSF']) end it 'DOI not found' do input = 'https://doi.org/10.4124/05F6C379-DD68-4CDB-880D-33D3E9576D52/1' subject = described_class.new(input: input, from: 'datacite') expect(subject.valid?).to be false expect(subject.id).to eq('https://doi.org/10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1') expect(subject.doi).to eq('10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1') expect(subject.agency).to eq('DataCite') expect(subject.state).to eq('not_found') datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite['identifier']).to eq('identifierType' => 'DOI', '__content__' => '10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1') expect(datacite['xmlns']).to eq('http://datacite.org/schema/kernel-4') end it 'no input' do input = nil subject = described_class.new(input: input, from: 'datacite', doi: '10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1') expect(subject.valid?).to be false datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite['identifier']).to eq('identifierType' => 'DOI', '__content__' => '10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1') expect(datacite['xmlns']).to eq('http://datacite.org/schema/kernel-4') end end context 'change metadata as datacite xml' do it 'with data citation' do input = '10.7554/eLife.01567' subject = described_class.new(input: input, from: 'crossref') subject.doi = '10.5061/DRYAD.8515' subject.titles = [{ 'title' => 'Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth' }] subject.types = { 'schemaOrg' => 'Dataset', 'resourceTypeGeneral' => 'Dataset' } expect(subject.valid?).to be true datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('identifier', '__content__')).to eq('10.5061/DRYAD.8515') expect(datacite.dig('resourceType', 'resourceTypeGeneral')).to eq('Dataset') expect(datacite.dig('titles', 'title')).to eq('Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth') expect(datacite.dig('relatedIdentifiers', 'relatedIdentifier').length).to eq(28) expect(datacite.dig('relatedIdentifiers', 'relatedIdentifier').first).to eq('__content__' => '2050-084X', 'relatedIdentifierType' => 'ISSN', 'relationType' => 'IsPartOf', 'resourceTypeGeneral' => 'Collection') expect(datacite.dig('relatedIdentifiers', 'relatedIdentifier')[1]).to eq('relatedIdentifierType' => 'DOI', 'relationType' => 'References', '__content__' => '10.1038/nature02100') expect(datacite.dig('rightsList', 'rights')).to eq('rightsURI' => 'https://creativecommons.org/licenses/by/3.0/legalcode', 'rightsIdentifier' => 'cc-by-3.0', 'rightsIdentifierScheme' => 'SPDX', 'schemeURI' => 'https://spdx.org/licenses/', '__content__' => 'Creative Commons Attribution 3.0 Unported') expect(datacite.dig('fundingReferences', 'fundingReference').count).to eq(4) expect(datacite.dig('fundingReferences', 'fundingReference').last).to eq('funderName' => 'University of Lausanne', 'funderIdentifier' => { 'funderIdentifierType' => 'Crossref Funder ID', '__content__' => 'https://doi.org/10.13039/501100006390' }) end it 'change description' do input = '10.7554/eLife.01567' subject = described_class.new(input: input, from: 'crossref') subject.descriptions = { 'description' => 'This is an abstract.' } expect(subject.valid?).to be true datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('descriptions', 'description')).to eq([ { '__content__' => 'eLife, 3, e01567', 'descriptionType' => 'SeriesInformation' }, { '__content__' => 'This is an abstract.', 'descriptionType' => 'Abstract' } ]) end it 'change description no input' do input = nil subject = described_class.new(input: input, from: 'datacite', doi: '10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1') subject.descriptions = 'This is an abstract.' expect(subject.valid?).to be false datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('descriptions', 'description')).to eq('descriptionType' => 'Abstract', '__content__' => 'This is an abstract.') end it 'required metadata no input' do input = nil subject = described_class.new(input: input, doi: '10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1') subject.creators = [{ 'creatorName' => 'Fenner, Martin', 'givenName' => 'Martin', 'familyName' => 'Fenner' }] subject.titles = [{ 'title' => 'Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth' }] subject.types = { 'schemaOrg' => 'Dataset', 'resourceTypeGeneral' => 'Dataset' } subject.publication_year = '2011' subject.state = 'findable' expect(subject.exists?).to be true datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('identifier', '__content__')).to eq('10.4124/05f6c379-dd68-4cdb-880d-33d3e9576d52/1') expect(datacite.dig('resourceType', 'resourceTypeGeneral')).to eq('Dataset') expect(datacite.dig('titles', 'title')).to eq('Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth') end it 'change license' do input = '10.7554/eLife.01567' subject = described_class.new(input: input, from: 'crossref') subject.rights_list = [{ 'rights_uri' => 'https://creativecommons.org/licenses/by-nc-sa/4.0', 'rights' => 'Creative Commons Attribution-NonCommercial-ShareAlike' }] expect(subject.valid?).to be true datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('rightsList', 'rights')).to eq('Creative Commons Attribution-NonCommercial-ShareAlike') end it 'change license url' do input = '10.7554/eLife.01567' subject = described_class.new(input: input, from: 'crossref') subject.rights_list = [{ 'rightsUri' => 'https://creativecommons.org/licenses/by-nc-sa/4.0' }] expect(subject.valid?).to be true datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('rightsList', 'rights')).to eq('rightsURI' => 'https://creativecommons.org/licenses/by-nc-sa/4.0') end it 'change license name' do input = '10.7554/eLife.01567' subject = described_class.new(input: input, from: 'crossref') subject.rights_list = [{ 'rights' => 'Creative Commons Attribution-NonCommercial-ShareAlike' }] expect(subject.valid?).to be true datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('rightsList', 'rights')).to eq('Creative Commons Attribution-NonCommercial-ShareAlike') end it 'change state' do input = '10.7554/eLife.01567' subject = described_class.new(input: input, from: 'crossref') expect(subject.valid?).to be true expect(subject.state).to eq('findable') subject.state = 'registered' datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('identifier', '__content__')).to eq('10.7554/elife.01567') expect(subject.state).to eq('registered') end it 'change identifiers' do input = '10.7554/eLife.01567' subject = described_class.new(input: input, from: 'crossref') expect(subject.valid?).to be true expect(subject.identifiers).to eq([{ 'identifier' => 'e01567', 'identifierType' => 'article_number' }]) subject.identifiers = [{ 'identifierType' => 'article_number', 'identifier' => 'abc' }] datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('identifier', '__content__')).to eq('10.7554/elife.01567') expect(subject.identifiers).to eq([{ 'identifier' => 'abc', 'identifierType' => 'article_number' }]) end it 'validates against schema' do input = '10.7554/eLife.01567' subject = described_class.new(input: input, from: 'crossref') subject.doi = '123' subject.titles = 'Data from: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth' subject.types = { 'schemaOrg' => 'Dataset', 'resourceTypeGeneral' => 'Dataset' } expect(subject.doi).to eq('123') expect(subject.valid?).to be true end it 'from schema_org gtex' do input = "#{fixture_path}schema_org_gtex.json" subject = described_class.new(input: input, from: 'schema_org') expect(subject.valid?).to be true datacite = Maremma.from_xml(subject.datacite).fetch('resource', {}) expect(datacite.dig('identifier', '__content__')).to eq('10.25491/d50j-3083') expect(datacite.dig('creators', 'creator').count).to eq(1) expect(datacite.dig('creators', 'creator')).to eq('creatorName' => { '__content__' => 'The GTEx Consortium', 'nameType' => 'Organizational' }) expect(datacite.dig('resourceType', 'resourceTypeGeneral')).to eq('Dataset') expect(datacite.dig('resourceType', '__content__')).to eq('Gene expression matrices') expect(datacite.dig('titles', 'title')).to eq('Fully processed, filtered and normalized gene expression matrices (in BED format) for each tissue, which were used as input into FastQTL for eQTL discovery') expect(datacite['version']).to eq('v7') expect(datacite['publisher']).to eq('GTEx') expect(datacite.dig('descriptions', 'description')).to eq('__content__' => 'GTEx', 'descriptionType' => 'SeriesInformation') expect(datacite['publicationYear']).to eq('2017') expect(datacite.dig('dates', 'date')).to eq('__content__' => '2017', 'dateType' => 'Issued') expect(datacite.dig('subjects', 'subject')).to eq(['gtex', 'annotation', 'phenotype', 'gene regulation', 'transcriptomics']) expect(datacite.dig('alternateIdentifiers', 'alternateIdentifier')).to eq('__content__' => '687610993', 'alternateIdentifierType' => 'md5') expect(datacite.dig('fundingReferences', 'fundingReference').count).to eq(7) expect(datacite.dig('fundingReferences', 'fundingReference').last).to eq( 'funderIdentifier' => { '__content__' => 'https://doi.org/10.13039/100000065', 'funderIdentifierType' => 'Crossref Funder ID' }, 'funderName' => 'National Institute of Neurological Disorders and Stroke (NINDS)' ) end end end