--- !ruby/object:Gem::Specification 
name: ms-msrun
version: !ruby/object:Gem::Version 
  prerelease: false
  segments: 
  - 0
  - 3
  - 1
  version: 0.3.1
platform: ruby
authors: 
- John T. Prince
autorequire: 
bindir: bin
cert_chain: []

date: 2011-01-26 00:00:00 -07:00
default_executable: 
dependencies: 
- !ruby/object:Gem::Dependency 
  name: ms-core
  prerelease: false
  requirement: &id001 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        segments: 
        - 0
        - 0
        - 3
        version: 0.0.3
  type: :runtime
  version_requirements: *id001
- !ruby/object:Gem::Dependency 
  name: nokogiri
  prerelease: false
  requirement: &id002 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        segments: 
        - 0
        version: "0"
  type: :runtime
  version_requirements: *id002
- !ruby/object:Gem::Dependency 
  name: narray
  prerelease: false
  requirement: &id003 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        segments: 
        - 0
        version: "0"
  type: :runtime
  version_requirements: *id003
description: A library for working with LC/MS runs. Part of mspire.  Has parsers for mzXML v1, 2, and 3, mzData (currently broken) and mzML (planned).  Can convert to commonly desired search output (such as mgf).  Fast random access of scans, and fast reading of the entire file.
email: jtprince@gmail.com
executables: 
- base64_to_array.rb
- ms_to_obiwarp.rb
- ms_to_search.rb
extensions: []

extra_rdoc_files: 
- LICENSE
- README.rdoc
files: 
- .gitignore
- .gitmodules
- History
- LICENSE
- README.rdoc
- Rakefile
- VERSION
- bin/base64_to_array.rb
- bin/ms_to_obiwarp.rb
- bin/ms_to_search.rb
- lib/ms/msrun.rb
- lib/ms/msrun/axml/mzxml.rb
- lib/ms/msrun/index.rb
- lib/ms/msrun/mzxml.rb
- lib/ms/msrun/nokogiri.rb
- lib/ms/msrun/nokogiri/mzml.rb
- lib/ms/msrun/nokogiri/mzxml.rb
- lib/ms/msrun/plms1.rb
- lib/ms/msrun/regexp/mzxml.rb
- lib/ms/msrun/search.rb
- lib/ms/msrun/search_dev_notes.txt
- lib/ms/msrun/sha1.rb
- lib/ms/mzxml.rb
- lib/ms/precursor.rb
- lib/ms/precursor/lazy_parent.rb
- lib/ms/scan.rb
- lib/ms/spectrum/compare.rb
- lib/ms/spectrum/filter.rb
- spec/metadata/opd1/000.v1.mzXML.yml
- spec/metadata/opd1/000.v2.1.mzXML.yml
- spec/metadata/opd1/020.mzData.xml.yml
- spec/metadata/opd1/020.v2.0.readw.mzXML.yml
- spec/ms/msrun/hpricot.rb
- spec/ms/msrun/index_spec.rb
- spec/ms/msrun/plms1_spec.rb
- spec/ms/msrun/scan_spec.rb
- spec/ms/msrun/search_spec.rb
- spec/ms/msrun/sha1_spec.rb
- spec/ms/msrun/test_parsing_xml_frags/parse_test.rb
- spec/ms/msrun/test_parsing_xml_frags/test1.xml
- spec/ms/msrun/test_parsing_xml_frags/test2.xml
- spec/ms/msrun/test_parsing_xml_frags/test3.xml
- spec/ms/msrun/test_parsing_xml_frags/test4.xml
- spec/ms/msrun/test_parsing_xml_frags/test_failures.rb
- spec/ms/msrun_bm.rb
- spec/ms/msrun_spec.rb
- spec/ms/scan_spec.rb
- spec/ms/spectrum/compare_spec.rb
- spec/ms/spectrum/filter_spec.rb
- spec/spec_helper.rb
- spec/testfiles/J/j24.mzML
- spec/testfiles/J/j24.mzML.key.yml
- spec/testfiles/J/j24.mzXML
- spec/testfiles/J/j24.mzXML.key.yml
- spec/testfiles/J/j24.raw
- spec/testfiles/J/j24z.mgf
- spec/testfiles/J/j24z.mzML
- spec/testfiles/J/j24z.mzML.key.yml
- spec/testfiles/J/j24z.mzXML
- spec/testfiles/J/j24z.mzXML.key.yml
- spec/testfiles/J/key-j10z.mgf
- spec/testfiles/J/key-j24z.mgf
- spec/testfiles/J/key-j24z.ms2
- spec/testfiles/lmat/tmp1.lmat
- spec/testfiles/lmat/tmp1.lmata
- spec/testfiles/lmat/tmp2.lmata
- spec/testfiles/opd1/000.v1.mzXML
- spec/testfiles/opd1/000.v1.mzXML.key.yml
- spec/testfiles/opd1/000.v2.1.mzXML
- spec/testfiles/opd1/000.v2.1.mzXML.key.yml
- spec/testfiles/opd1/020.mzData.xml
- spec/testfiles/opd1/020.mzData.xml.key.yml
- spec/testfiles/opd1/020.v2.0.readw.mzXML
- spec/testfiles/opd1/020.v2.0.readw.mzXML.key.yml
- spec/testfiles/plms1_output.key
has_rdoc: true
homepage: http://jtprince.github.com/ms-msrun/rdoc
licenses: []

post_install_message: 
rdoc_options: 
- --charset=UTF-8
require_paths: 
- lib
required_ruby_version: !ruby/object:Gem::Requirement 
  none: false
  requirements: 
  - - ">="
    - !ruby/object:Gem::Version 
      segments: 
      - 0
      version: "0"
required_rubygems_version: !ruby/object:Gem::Requirement 
  none: false
  requirements: 
  - - ">="
    - !ruby/object:Gem::Version 
      segments: 
      - 0
      version: "0"
requirements: []

rubyforge_project: mspire
rubygems_version: 1.3.7
signing_key: 
specification_version: 3
summary: an mspire library for working with LC/MS runs (mzxml, mzData, mzML)
test_files: 
- spec/ms/msrun_bm.rb
- spec/ms/msrun/test_parsing_xml_frags/test_failures.rb
- spec/ms/msrun/test_parsing_xml_frags/parse_test.rb
- spec/ms/msrun/search_spec.rb
- spec/ms/msrun/plms1_spec.rb
- spec/ms/msrun/index_spec.rb
- spec/ms/msrun/hpricot.rb
- spec/ms/msrun/sha1_spec.rb
- spec/ms/msrun/scan_spec.rb
- spec/ms/spectrum/filter_spec.rb
- spec/ms/spectrum/compare_spec.rb
- spec/ms/msrun_spec.rb
- spec/ms/scan_spec.rb
- spec/spec_helper.rb