# frozen_string_literal: true

require 'spec_helper'

describe Bolognese::Metadata, vcr: true do
  context "write metadata as citeproc" do
    it "Dataset" do
      input = "https://doi.org/10.5061/DRYAD.8515"
      subject = Bolognese::Metadata.new(input: input, from: "datacite")
      expect(subject.valid?).to be true
      json = JSON.parse(subject.citeproc)
      expect(json["type"]).to eq("dataset")
      expect(json["id"]).to eq("https://doi.org/10.5061/dryad.8515")
      expect(json["DOI"]).to eq("10.5061/dryad.8515")
      expect(json["title"]).to eq("Data from: A new malaria agent in African hominids.")
      expect(json["author"]).to eq([{"family"=>"Ollomo", "given"=>"Benjamin"},
                                    {"family"=>"Durand", "given"=>"Patrick"},
                                    {"family"=>"Prugnolle", "given"=>"Franck"},
                                    {"family"=>"Douzery", "given"=>"Emmanuel J. P."},
                                    {"family"=>"Arnathau", "given"=>"Céline"},
                                    {"family"=>"Nkoghe", "given"=>"Dieudonné"},
                                    {"family"=>"Leroy", "given"=>"Eric"},
                                    {"family"=>"Renaud", "given"=>"François"}])
      expect(json["publisher"]).to eq("Dryad Digital Repository")
      expect(json["issued"]).to eq("date-parts" => [[2011]])
      expect(json["submitted"]).to be_nil
    end

    it "BlogPosting" do
      input = "https://doi.org/10.5438/4K3M-NYVG"
      subject = Bolognese::Metadata.new(input: input, from: "datacite")
      expect(subject.valid?).to be true
      json = JSON.parse(subject.citeproc)
      expect(json["type"]).to eq("article-journal")
      expect(json["id"]).to eq("https://doi.org/10.5438/4k3m-nyvg")
      expect(json["DOI"]).to eq("10.5438/4k3m-nyvg")
      expect(json["title"]).to eq("Eating your own Dog Food")
      expect(json["author"]).to eq([{"family"=>"Fenner", "given"=>"Martin"}])
      expect(json["publisher"]).to eq("DataCite")
      expect(json["issued"]).to eq("date-parts"=>[[2016, 12, 20]])
    end

    it "BlogPosting DataCite JSON" do
      input = fixture_path + "datacite.json"
      subject = Bolognese::Metadata.new(input: input, from: "datacite_json")
      json = JSON.parse(subject.citeproc)
      expect(json["type"]).to eq("article-journal")
      expect(json["id"]).to eq("https://doi.org/10.5438/4k3m-nyvg")
      expect(json["DOI"]).to eq("10.5438/4k3m-nyvg")
      expect(json["title"]).to eq("Eating your own Dog Food")
      expect(json["author"]).to eq([{"family"=>"Fenner", "given"=>"Martin"}])
      expect(json["publisher"]).to eq("DataCite")
      expect(json["issued"]).to eq("date-parts" => [[2016, 12, 20]])
    end

    it "BlogPosting schema.org" do
      input = "https://blog.datacite.org/eating-your-own-dog-food/"
      subject = Bolognese::Metadata.new(input: input, from: "schema_org")
      json = JSON.parse(subject.citeproc)
      expect(json["type"]).to eq("post-weblog")
      expect(json["id"]).to eq("https://doi.org/10.5438/4k3m-nyvg")
      expect(json["DOI"]).to eq("10.5438/4k3m-nyvg")
      expect(json["title"]).to eq("Eating your own Dog Food")
      expect(json["author"]).to eq([{"family"=>"Fenner", "given"=>"Martin"}])
      expect(json["publisher"]).to eq("DataCite")
      expect(json["issued"]).to eq("date-parts" => [[2016, 12, 20]])
    end

    it "journal article" do
      input = "10.7554/eLife.01567"
      subject = Bolognese::Metadata.new(input: input, from: "crossref")
      expect(subject.valid?).to be true
      json = JSON.parse(subject.citeproc)
      expect(json["type"]).to eq("article-journal")
      expect(json["id"]).to eq("https://doi.org/10.7554/elife.01567")
      expect(json["DOI"]).to eq("10.7554/elife.01567")
      expect(json["title"]).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
      expect(json["author"]).to eq([{"family"=>"Sankar", "given"=>"Martial"},
                                    {"family"=>"Nieminen", "given"=>"Kaisa"},
                                    {"family"=>"Ragni", "given"=>"Laura"},
                                    {"family"=>"Xenarios", "given"=>"Ioannis"},
                                    {"family"=>"Hardtke", "given"=>"Christian S"}])
      expect(json["container-title"]).to eq("eLife")
      expect(json["volume"]).to eq("3")
      expect(json["issued"]).to eq("date-parts" => [[2014, 2, 11]])
    end

    it "software" do
      input = "https://doi.org/10.6084/m9.figshare.4906367.v1"
      subject = Bolognese::Metadata.new(input: input, from: "datacite")
      json = JSON.parse(subject.citeproc)
      expect(json["type"]).to eq("article")
      expect(json["DOI"]).to eq("10.6084/m9.figshare.4906367.v1")
      expect(json["title"]).to eq("Scimag catalogue of LibGen as of January 1st, 2014")
    end

    it "multiple abstracts" do
      input = "https://doi.org/10.12763/ona1045"
      subject = Bolognese::Metadata.new(input: input, from: "datacite")
      json = JSON.parse(subject.citeproc)
      expect(json["type"]).to eq("article-journal")
      expect(json["DOI"]).to eq("10.12763/ona1045")
      expect(json["abstract"]).to eq("Le code est accompagné de commentaires de F. A. Vogel, qui signe l'épitre dédicatoire")
    end

    it "with pages" do
      input = "https://doi.org/10.1155/2012/291294"
      subject = Bolognese::Metadata.new(input: input, from: "crossref")
      expect(subject.valid?).to be true
      json = JSON.parse(subject.citeproc)
      expect(json["type"]).to eq("article-journal")
      expect(json["id"]).to eq("https://doi.org/10.1155/2012/291294")
      expect(json["DOI"]).to eq("10.1155/2012/291294")
      expect(json["title"]).to eq("Delineating a Retesting Zone Using Receiver Operating Characteristic Analysis on Serial QuantiFERON Tuberculosis Test Results in US Healthcare Workers")
      expect(json["author"]).to eq([{"family"=>"Thanassi", "given"=>"Wendy"},
                                    {"family"=>"Noda", "given"=>"Art"},
                                    {"family"=>"Hernandez", "given"=>"Beatriz"},
                                    {"family"=>"Newell", "given"=>"Jeffery"},
                                    {"family"=>"Terpeluk", "given"=>"Paul"},
                                    {"family"=>"Marder", "given"=>"David"},
                                    {"family"=>"Yesavage", "given"=>"Jerome A."}])
      expect(json["container-title"]).to eq("Pulmonary Medicine")
      expect(json["volume"]).to eq("2012")
      expect(json["page"]).to eq("1-7")
      expect(json["issued"]).to eq("date-parts"=>[[2012]])
    end

    it "with only first page" do
      input = "https://doi.org/10.1371/journal.pone.0214986"
      subject = Bolognese::Metadata.new(input: input, from: "crossref")
      expect(subject.valid?).to be true
      json = JSON.parse(subject.citeproc)
      expect(json["type"]).to eq("article-journal")
      expect(json["id"]).to eq("https://doi.org/10.1371/journal.pone.0214986")
      expect(json["DOI"]).to eq("10.1371/journal.pone.0214986")
      expect(json["title"]).to eq("River metrics by the public, for the public")
      expect(json["author"]).to eq([{"family"=>"Weber", "given"=>"Matthew A."}, {"family"=>"Ringold", "given"=>"Paul L."}])
      expect(json["container-title"]).to eq("PLOS ONE")
      expect(json["volume"]).to eq("14")
      expect(json["page"]).to eq("e0214986")
      expect(json["issued"]).to eq("date-parts"=>[[2019, 5, 8]])
    end

    it "missing creator" do
      input = "https://doi.org/10.3390/publications6020015"
      subject = Bolognese::Metadata.new(input: input, from: "crossref")
      expect(subject.valid?).to be true
      json = JSON.parse(subject.citeproc)
      expect(json["type"]).to eq("article-journal")
      expect(json["id"]).to eq("https://doi.org/10.3390/publications6020015")
      expect(json["DOI"]).to eq("10.3390/publications6020015")
      expect(json["title"]).to eq("Converting the Literature of a Scientific Field to Open Access through Global Collaboration: The Experience of SCOAP3 in Particle Physics")
      expect(json["author"]).to be_nil
      expect(json["container-title"]).to eq("Publications")
      expect(json["publisher"]).to eq("MDPI AG")
      expect(json["page"]).to eq("15")
      expect(json["issued"]).to eq("date-parts"=>[[2018, 4, 9]])
    end

    it "container title" do
      input = "https://doi.org/10.6102/ZIS146"
      subject = Bolognese::Metadata.new(input: input, from: "datacite")
      json = JSON.parse(subject.citeproc)
      expect(json["type"]).to eq("article-journal")
      expect(json["id"]).to eq("https://doi.org/10.6102/zis146")
      expect(json["DOI"]).to eq("10.6102/zis146")
      expect(json["title"]).to eq("Deutsche Version der Positive and Negative Affect Schedule (PANAS)")
      expect(json["author"]).to eq([{"family"=>"Janke", "given"=>"S."},
                                    {"family"=>"Glöckner-Rist", "given"=>"A."}])
      expect(json["container-title"]).to eq("Zusammenstellung sozialwissenschaftlicher Items und Skalen (ZIS)")
      expect(json["issued"]).to eq("date-parts" => [[2012]])
    end

    it "Crossref DOI" do
      input = fixture_path + "crossref.bib"
      subject = Bolognese::Metadata.new(input: input, from: "bibtex")
      json = JSON.parse(subject.citeproc)
      expect(json["type"]).to eq("article-journal")
      expect(json["id"]).to eq("https://doi.org/10.7554/elife.01567")
      expect(json["DOI"]).to eq("10.7554/elife.01567")
      expect(json["URL"]).to eq("http://elifesciences.org/lookup/doi/10.7554/eLife.01567")
      expect(json["title"]).to eq("Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth")
      expect(json["author"]).to eq([{"family"=>"Sankar", "given"=>"Martial"},
                                    {"family"=>"Nieminen", "given"=>"Kaisa"},
                                    {"family"=>"Ragni", "given"=>"Laura"},
                                    {"family"=>"Xenarios", "given"=>"Ioannis"},
                                    {"family"=>"Hardtke", "given"=>"Christian S"}])
      expect(json["container-title"]).to eq("eLife")
      expect(json["issued"]).to eq("date-parts" => [[2014]])
    end

    it "author is organization" do
      input = fixture_path + 'gtex.xml'
      subject = Bolognese::Metadata.new(input: input, from: "datacite")
      json = JSON.parse(subject.citeproc)
      expect(json["id"]).to eq("https://doi.org/10.25491/9hx8-ke93")
      expect(json["author"]).to eq([{"literal"=>"The GTEx Consortium"}])
    end

    it "maremma" do
      input = "https://github.com/datacite/maremma"
      subject = Bolognese::Metadata.new(input: input, from: "codemeta")
      json = JSON.parse(subject.citeproc)
      expect(json["type"]).to eq("article-journal")
      expect(json["id"]).to eq("https://doi.org/10.5438/qeg0-3gm3")
      expect(json["DOI"]).to eq("10.5438/qeg0-3gm3")
      expect(json["title"]).to eq("Maremma: a Ruby library for simplified network calls")
      expect(json["author"]).to eq([{"family"=>"Fenner", "given"=>"Martin"}])
      expect(json["publisher"]).to eq("DataCite")
      expect(json["issued"]).to eq("date-parts" => [[2017, 2, 24]])
    end

    it "keywords subject scheme" do
      input = "https://doi.org/10.1594/pangaea.721193"
      subject = Bolognese::Metadata.new(input: input, from: "datacite")
      json = JSON.parse(subject.citeproc)
      expect(json["type"]).to eq("dataset")
      expect(json["id"]).to eq("https://doi.org/10.1594/pangaea.721193")
      expect(json["DOI"]).to eq("10.1594/pangaea.721193")
      expect(json["categories"]).to include("Animalia", "Bottles or small containers/Aquaria ( 20 L)", "Calcification/Dissolution", "Coast and continental shelf", "Development", "Growth/Morphology", "Laboratory experiment", "Mollusca", "Pelagos", "Single species", "Temperate", "Zooplankton", "Experimental treatment", "Carbonate system computation flag", "Temperature, water", "Salinity", "pH", "Alkalinity, total", "Carbon, inorganic, dissolved", "Carbon dioxide", "Bicarbonate ion", "Carbonate ion", "Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)", "Fugacity of carbon dioxide (water) at sea surface temperature (wet air)", "Aragonite saturation state", "Calcite saturation state", "Proportion", "Crassostrea gigas, larvae length", "Crassostrea gigas, larvae height", "Crassostrea gigas, non mineralized", "Crassostrea gigas, partially mineralized", "Crassostrea gigas, fully mineralized", "Calculated using seacarb after Nisumaa et al. (2010)", "Refractometer (Atago 100-S)", "pH meter (Mettler Toledo)", "pH meter (PHM290, Radiometer)", "Measured", "European Project on Ocean Acidification (EPOCA)", "European network of excellence for Ocean Ecosystems Analysis (EUR-OCEANS)", "Ocean Acidification International Coordination Centre (OA-ICC)")
    end
  end
end