Sha256: bf135eca22243d6d1c00c31e6716269a19f6b4d361eb891dfa659d38c65ddfb8
Contents?: true
Size: 827 Bytes
Versions: 4
Compression:
Stored size: 827 Bytes
Contents
require 'parallel' require 'pathname' module Bio class Gadget < Thor namespace :bio desc 'fqlzma', 'automatic (re)compression of *.fq(.gz|.bz2) files' def fqlzma Parallel.map(Pathname.glob('*.fq{.gz,.bz2,}')) { |fqfilename| lzmafilename = fqfilename.sub(/\.fq(\.(gz|bz2))*$/, '.fq.lzma') if !lzmafilename.exist? case fqfilename.extname when '.gz' decompressor = 'gunzip -c' when '.bz2' decompressor = 'bunzip2 -c' else decompressor = 'cat' end puts "compressing #{lzmafilename}..." system "#{decompressor} #{fqfilename} | lzma -c > #{lzmafilename} 2> #{lzmafilename}.log" system "lzma -t #{lzmafilename} >> #{lzmafilename}.log 2>&1" end } end end end
Version data entries
4 entries across 4 versions & 1 rubygems
Version | Path |
---|---|
bio-gadget-0.1.4 | lib/bio-gadget/fqlzma.rb |
bio-gadget-0.1.3 | lib/bio-gadget/fqlzma.rb |
bio-gadget-0.1.2 | lib/bio-gadget/fqlzma.rb |
bio-gadget-0.1.1 | lib/bio-gadget/fqlzma.rb |