# Generated by jeweler # DO NOT EDIT THIS FILE DIRECTLY # Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec' # -*- encoding: utf-8 -*- Gem::Specification.new do |s| s.name = "bio-gngm" s.version = "0.2.1" s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version= s.authors = ["Dan MacLean"] s.date = "2012-12-06" s.description = "Identify causative mutations in a model genome from NGS reads using the NGM method." s.email = "maclean.daniel@gmail.com" s.extra_rdoc_files = [ "LICENSE.txt", "README.rdoc" ] s.files = [ ".document", "Gemfile", "Gemfile.lock", "LICENSE.txt", "README.rdoc", "Rakefile", "VERSION", "bio-gngm.gemspec", "doc/Bio.html", "doc/Bio/DB.html", "doc/Bio/DB/FastaLengthDB.html", "doc/Bio/DB/Pileup.html", "doc/Bio/DB/Vcf.html", "doc/Bio/Util.html", "doc/Bio/Util/Gngm.html", "doc/LICENSE_txt.html", "doc/_index.html", "doc/class_list.html", "doc/created.rid", "doc/css/common.css", "doc/css/full_list.css", "doc/css/style.css", "doc/doc/created.rid", "doc/file_list.html", "doc/frames.html", "doc/images/add.png", "doc/images/bands.png", "doc/images/brick.png", "doc/images/brick_link.png", "doc/images/bug.png", "doc/images/bullet_black.png", "doc/images/bullet_toggle_minus.png", "doc/images/bullet_toggle_plus.png", "doc/images/date.png", "doc/images/delete.png", "doc/images/find.png", "doc/images/loadingAnimation.gif", "doc/images/macFFBgHack.png", "doc/images/package.png", "doc/images/page_green.png", "doc/images/page_white_text.png", "doc/images/page_white_width.png", "doc/images/plugin.png", "doc/images/ruby.png", "doc/images/signal.png", "doc/images/tag_blue.png", "doc/images/tag_green.png", "doc/images/threads.png", "doc/images/transparent.png", "doc/images/wrench.png", "doc/images/wrench_orange.png", "doc/images/zoom.png", "doc/index.html", "doc/js/app.js", "doc/js/darkfish.js", "doc/js/full_list.js", "doc/js/jquery.js", "doc/js/navigation.js", "doc/js/search.js", "doc/js/search_index.js", "doc/js/searcher.js", "doc/lib/bio-gngm_rb.html", "doc/lib/bio/util/bio-gngm_rb.html", "doc/method_list.html", "doc/rdoc.css", "doc/table_of_contents.html", "examples/.DS_Store", "examples/Chr1.html", "examples/gngm_qtl_mapping_HTML_maker_set_options.rb", "examples/make_histograms.rb", "examples/make_threads.rb", "examples/make_threads_isize.rb", "examples/pileup.txt", "examples/snps.vcf", "examples/use_indels.rb", "lib/bio-gngm.rb", "lib/bio/util/bio-gngm.rb", "scripts/get_subseq.rb", "scripts/make_histograms_laerfyve.rb", "scripts/make_histograms_laerfyve_stitched.rb", "scripts/make_threads_isize_laerfyfe.rb", "scripts/make_threads_unmapped_laerfyfe.rb", "scripts/make_threads_unmapped_laerfyfe_pseudo.rb", "scripts/make_threads_unmapped_simulation.rb", "scripts/make_threads_unmapped_simulation_immediate_region.rb", "scripts/optimise_freq_window_size.rb", "stitched_contigs.zip", "test/data/ids2.txt", "test/data/sorted.bam", "test/data/test", "test/data/test.bam", "test/data/test.fa", "test/data/test.fai", "test/data/test.sai", "test/data/test.tam", "test/data/test_chr.fasta", "test/data/test_chr.fasta.amb", "test/data/test_chr.fasta.ann", "test/data/test_chr.fasta.bwt", "test/data/test_chr.fasta.fai", "test/data/test_chr.fasta.pac", "test/data/test_chr.fasta.rbwt", "test/data/test_chr.fasta.rpac", "test/data/test_chr.fasta.rsa", "test/data/test_chr.fasta.sa", "test/data/testu.bam", "test/data/testu.bam.bai", "test/helper.rb", "test/test_bio-gngm.rb" ] s.homepage = "http://github.com/danmaclean/bioruby-gngm" s.licenses = ["MIT"] s.require_paths = ["lib"] s.rubygems_version = "1.8.10" s.summary = "Next-Generation Mapping of Mutations" if s.respond_to? :specification_version then s.specification_version = 3 if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then s.add_runtime_dependency(%q, [">= 1.4.2"]) s.add_runtime_dependency(%q, [">= 0.5.0"]) s.add_runtime_dependency(%q, [">= 2.0.2"]) s.add_development_dependency(%q, [">= 0"]) s.add_development_dependency(%q, ["~> 1.0.0"]) s.add_development_dependency(%q, [">= 0"]) s.add_development_dependency(%q, [">= 0"]) s.add_development_dependency(%q, [">= 1.4.2"]) s.add_development_dependency(%q, [">= 0.5.0"]) s.add_development_dependency(%q, [">= 2.0.2"]) s.add_development_dependency(%q, [">= 0"]) else s.add_dependency(%q, [">= 1.4.2"]) s.add_dependency(%q, [">= 0.5.0"]) s.add_dependency(%q, [">= 2.0.2"]) s.add_dependency(%q, [">= 0"]) s.add_dependency(%q, ["~> 1.0.0"]) s.add_dependency(%q, [">= 0"]) s.add_dependency(%q, [">= 0"]) s.add_dependency(%q, [">= 1.4.2"]) s.add_dependency(%q, [">= 0.5.0"]) s.add_dependency(%q, [">= 2.0.2"]) s.add_dependency(%q, [">= 0"]) end else s.add_dependency(%q, [">= 1.4.2"]) s.add_dependency(%q, [">= 0.5.0"]) s.add_dependency(%q, [">= 2.0.2"]) s.add_dependency(%q, [">= 0"]) s.add_dependency(%q, ["~> 1.0.0"]) s.add_dependency(%q, [">= 0"]) s.add_dependency(%q, [">= 0"]) s.add_dependency(%q, [">= 1.4.2"]) s.add_dependency(%q, [">= 0.5.0"]) s.add_dependency(%q, [">= 2.0.2"]) s.add_dependency(%q, [">= 0"]) end end