Sha256: bb29d17b6cbf8a5918072b542763d87cd8223f86d7c6f14f27b220c97b5fb4ee
Contents?: true
Size: 1021 Bytes
Versions: 15
Compression:
Stored size: 1021 Bytes
Contents
#
# test/unit/bio/appl/meme/test_motif.rb - Unit test for Bio::Meme::Motif
#
# Copyright:: Copyright (C) 2008 Adam Kraut <adamnkraut@gmail.com>
# License:: The Ruby License
#
# loading helper routine for testing bioruby
require 'pathname'
load Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 4,
'bioruby_test_helper.rb')).cleanpath.to_s
# libraries needed for the tests
require 'test/unit'
require 'bio/appl/meme/motif'
module Bio
class TestMotif < Test::Unit::TestCase
def setup
@motif = Meme::Motif.new("P12345", "A", "1", "10", "30", "1.0e-100")
end
def test_creation_and_attributes
assert_equal("P12345", @motif.sequence_name)
assert_equal("A", @motif.strand)
assert_equal(1, @motif.motif)
assert_equal(10, @motif.start_pos)
assert_equal(30, @motif.end_pos)
assert_equal(1.0e-100, @motif.pvalue)
end
def test_length
assert_equal(20, @motif.length)
end
end # TestMotif
end # Bio
Version data entries
15 entries across 15 versions & 1 rubygems