| Module | Bio::DB::SAM::Tools |
| In: |
lib/bio/db/sam/bam.rb
lib/bio/db/sam/faidx.rb lib/bio/db/sam/sam.rb |
| BAM_FPAIRED | = | 1 |
| BAM_FPROPER_PAIR | = | 2 |
| BAM_FUNMAP | = | 4 |
| BAM_FMUNMAP | = | 8 |
| BAM_FREVERSE | = | 16 |
| BAM_FMREVERSE | = | 32 |
| BAM_FREAD1 | = | 64 |
| BAM_FREAD2 | = | 128 |
| BAM_FSECONDARY | = | 256 |
| BAM_FQCFAIL | = | 512 |
| BAM_FDUP | = | 1024 |
| BAM_OFDEC | = | 0 |
| BAM_OFHEX | = | 1 |
| BAM_OFSTR | = | 2 |
| BAM_DEF_MASK | = | (4|256|512|1024) |
| BAM_CIGAR_SHIFT | = | 4 |
| BAM_CIGAR_MASK | = | ((1 << 4) -1) |
| BAM_CMATCH | = | 0 |
| BAM_CINS | = | 1 |
| BAM_CDEL | = | 2 |
| BAM_CREF_SKIP | = | 3 |
| BAM_CSOFT_CLIP | = | 4 |
| BAM_CHARD_CLIP | = | 5 |
| BAM_CPAD | = | 6 |