--- !ruby/object:Gem::Specification
name: viral_seq
version: !ruby/object:Gem::Version
  version: 1.6.4
platform: ruby
authors:
- Shuntai Zhou
- Michael Clark
autorequire:
bindir: bin
cert_chain: []
date: 2022-07-19 00:00:00.000000000 Z
dependencies:
- !ruby/object:Gem::Dependency
  name: bundler
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '2.0'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '2.0'
- !ruby/object:Gem::Dependency
  name: rake
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '13.0'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '13.0'
- !ruby/object:Gem::Dependency
  name: rspec
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '3.0'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '3.0'
- !ruby/object:Gem::Dependency
  name: muscle_bio
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '0.5'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '0.5'
- !ruby/object:Gem::Dependency
  name: colorize
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '0.1'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '0.1'
- !ruby/object:Gem::Dependency
  name: prawn
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '2.3'
    - - ">="
      - !ruby/object:Gem::Version
        version: 2.3.0
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '2.3'
    - - ">="
      - !ruby/object:Gem::Version
        version: 2.3.0
- !ruby/object:Gem::Dependency
  name: prawn-table
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '0.2'
    - - ">="
      - !ruby/object:Gem::Version
        version: 0.2.0
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '0.2'
    - - ">="
      - !ruby/object:Gem::Version
        version: 0.2.0
- !ruby/object:Gem::Dependency
  name: combine_pdf
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '1.0'
    - - ">="
      - !ruby/object:Gem::Version
        version: 1.0.0
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - "~>"
      - !ruby/object:Gem::Version
        version: '1.0'
    - - ">="
      - !ruby/object:Gem::Version
        version: 1.0.0
description: |-
  A Ruby Gem with bioinformatics tools for processing viral NGS data.
                            Specifically for Primer-ID sequencing and HIV drug resistance analysis.
email:
- shuntai.zhou@gmail.com
- clarkmu@gmail.com
executables:
- locator
- tcs
- tcs_log
- tcs_sdrm
extensions: []
extra_rdoc_files: []
files:
- ".gitignore"
- ".rspec"
- ".travis.yml"
- CODE_OF_CONDUCT.md
- Gemfile
- Gemfile.lock
- LICENSE.txt
- README.md
- Rakefile
- bin/locator
- bin/tcs
- bin/tcs_log
- bin/tcs_sdrm
- docs/assets/img/cover.jpg
- docs/dr.json
- docs/sample_miseq_data/hivdr_control/r1.fastq.gz
- docs/sample_miseq_data/hivdr_control/r2.fastq.gz
- docs/variants_structure.pdf
- lib/viral_seq.rb
- lib/viral_seq/constant.rb
- lib/viral_seq/enumerable.rb
- lib/viral_seq/hash.rb
- lib/viral_seq/hivdr.rb
- lib/viral_seq/math.rb
- lib/viral_seq/muscle.rb
- lib/viral_seq/pid.rb
- lib/viral_seq/recency.rb
- lib/viral_seq/ref_seq.rb
- lib/viral_seq/rubystats.rb
- lib/viral_seq/sdrm.rb
- lib/viral_seq/seq_hash.rb
- lib/viral_seq/seq_hash_pair.rb
- lib/viral_seq/sequence.rb
- lib/viral_seq/string.rb
- lib/viral_seq/tcs_core.rb
- lib/viral_seq/tcs_dr.rb
- lib/viral_seq/tcs_json.rb
- lib/viral_seq/version.rb
- rc_swans.svc@longleaf.unc.edu
- viral_seq.gemspec
homepage: https://github.com/ViralSeq/viral_seq
licenses:
- MIT
metadata: {}
post_install_message: Thanks for installing!
rdoc_options: []
require_paths:
- lib
required_ruby_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">="
    - !ruby/object:Gem::Version
      version: '2.5'
required_rubygems_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">="
    - !ruby/object:Gem::Version
      version: 1.3.6
requirements:
- R required for some functions
rubygems_version: 3.2.2
signing_key:
specification_version: 4
summary: A Ruby Gem containing bioinformatics tools for processing viral NGS data.
test_files: []