# GENOMER-VIEW-GFF 1

## NAME

genomer-view-gff(1) -- Generate GFF3 view of genome scaffold annotations

## SYNOPSIS

`genomer view gff [<annotation-options>]`

## DESCRIPTION

**Genomer-view-gff** produces a [GFF3 formatted][gff] view of the genome
scaffold annotations. The IDs and coordinates of the annotations are updated to
reflect the locations of the source contigs in the genome scaffold. The man
page genomer-view(1) provides a listing of the \<annotation-options\> which may
be passed as arguments to update the annotations.

[gff]: http://www.sequenceontology.org/gff3.shtml

## EXAMPLES

    $ genomer view gff					 \
      --reset_locus_numbering=52 \
      --prefix='I1A_'

## BUGS

**Genomer-view** is written in Ruby and depends on the genomer gem. See the 
Gemfile in the genomer-plugin-view gem install directory for version details.

## COPYRIGHT

**Genomer** is Copyright (C) 2012 Michael Barton <http://michaelbarton.me.uk>