@base <http://onto.strinz.me/dc/dataset/maf_example/> .
@prefix ns:    <http://onto.strinz.me/dc/dataset/maf_example/> .
@prefix qb:    <http://purl.org/linked-data/cube#> .
@prefix rdf:   <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs:  <http://www.w3.org/2000/01/rdf-schema#> .
@prefix prop:  <http://onto.strinz.me/properties/> .
@prefix dct:   <http://purl.org/dc/terms/> .
@prefix xsd:   <http://www.w3.org/2001/XMLSchema#> .
@prefix cs:    <http://onto.strinz.me/dc/dataset/maf_example/cs/> .
@prefix code:  <http://onto.strinz.me/dc/dataset/maf_example/code/> .
@prefix owl:   <http://www.w3.org/2002/07/owl#> .
@prefix skos:  <http://www.w3.org/2004/02/skos/core#> .
@prefix foaf:     <http://xmlns.com/foaf/0.1/> .
@prefix org:      <http://www.w3.org/ns/org#> .
@prefix prov:     <http://www.w3.org/ns/prov#> .

ns:dsd-maf_example a qb:DataStructureDefinition;
  qb:component cs:Variant_Classification ;
  qb:component cs:Variant_Type ;
  qb:component cs:dbSNP_Val_Status ;
  qb:component cs:Verification_Status ;
  qb:component cs:Validation_Status ;
  qb:component cs:Mutation_Status ;
  qb:component cs:Sequence_Source ;
  qb:component cs:Sequencer ;
  qb:component cs:Hugo_Symbol ;
  qb:component cs:Entrez_Gene_Id ;
  qb:component cs:Center ;
  qb:component cs:NCBI_Build ;
  qb:component cs:Chromosome ;
  qb:component cs:Start_Position ;
  qb:component cs:End_Position ;
  qb:component cs:Strand ;
  qb:component cs:Reference_Allele ;
  qb:component cs:Tumor_Seq_Allele1 ;
  qb:component cs:Tumor_Seq_Allele2 ;
  qb:component cs:dbSNP_RS ;
  qb:component cs:Tumor_Sample_Barcode ;
  qb:component cs:Matched_Norm_Sample_Barcode ;
  qb:component cs:Match_Norm_Seq_Allele1 ;
  qb:component cs:Match_Norm_Seq_Allele2 ;
  qb:component cs:Tumor_Validation_Allele1 ;
  qb:component cs:Tumor_Validation_Allele2 ;
  qb:component cs:Match_Norm_Validation_Allele1 ;
  qb:component cs:Match_Norm_Validation_Allele2 ;
  qb:component cs:Sequencing_Phase ;
  qb:component cs:Validation_Method ;
  qb:component cs:Score ;
  qb:component cs:BAM_File ;
  qb:component cs:Tumor_Sample_UUID ;
  qb:component cs:Matched_Norm_Sample_UUID ;
  qb:component cs:patient_id ;
  qb:component cs:sample_id .

ns:dataset-maf_example a qb:DataSet ;
  rdfs:label "maf_example"@en ;
  qb:structure ns:dsd-maf_example .

cs:Variant_Classification a qb:ComponentSpecification ;
  rdfs:label "Variant_Classification" ;
  qb:dimension prop:Variant_Classification .

cs:Variant_Type a qb:ComponentSpecification ;
  rdfs:label "Variant_Type" ;
  qb:dimension prop:Variant_Type .

cs:dbSNP_Val_Status a qb:ComponentSpecification ;
  rdfs:label "dbSNP_Val_Status" ;
  qb:dimension prop:dbSNP_Val_Status .

cs:Verification_Status a qb:ComponentSpecification ;
  rdfs:label "Verification_Status" ;
  qb:dimension prop:Verification_Status .

cs:Validation_Status a qb:ComponentSpecification ;
  rdfs:label "Validation_Status" ;
  qb:dimension prop:Validation_Status .

cs:Mutation_Status a qb:ComponentSpecification ;
  rdfs:label "Mutation_Status" ;
  qb:dimension prop:Mutation_Status .

cs:Sequence_Source a qb:ComponentSpecification ;
  rdfs:label "Sequence_Source" ;
  qb:dimension prop:Sequence_Source .

cs:Sequencer a qb:ComponentSpecification ;
  rdfs:label "Sequencer" ;
  qb:dimension prop:Sequencer .

cs:Hugo_Symbol a qb:ComponentSpecification ;
  rdfs:label "Hugo_Symbol" ;
  qb:measure prop:Hugo_Symbol .

cs:Entrez_Gene_Id a qb:ComponentSpecification ;
  rdfs:label "Entrez_Gene_Id" ;
  qb:measure prop:Entrez_Gene_Id .

cs:Center a qb:ComponentSpecification ;
  rdfs:label "Center" ;
  qb:measure prop:Center .

cs:NCBI_Build a qb:ComponentSpecification ;
  rdfs:label "NCBI_Build" ;
  qb:measure prop:NCBI_Build .

cs:Chromosome a qb:ComponentSpecification ;
  rdfs:label "Chromosome" ;
  qb:measure prop:Chromosome .

cs:Start_Position a qb:ComponentSpecification ;
  rdfs:label "Start_Position" ;
  qb:measure prop:Start_Position .

cs:End_Position a qb:ComponentSpecification ;
  rdfs:label "End_Position" ;
  qb:measure prop:End_Position .

cs:Strand a qb:ComponentSpecification ;
  rdfs:label "Strand" ;
  qb:measure prop:Strand .

cs:Reference_Allele a qb:ComponentSpecification ;
  rdfs:label "Reference_Allele" ;
  qb:measure prop:Reference_Allele .

cs:Tumor_Seq_Allele1 a qb:ComponentSpecification ;
  rdfs:label "Tumor_Seq_Allele1" ;
  qb:measure prop:Tumor_Seq_Allele1 .

cs:Tumor_Seq_Allele2 a qb:ComponentSpecification ;
  rdfs:label "Tumor_Seq_Allele2" ;
  qb:measure prop:Tumor_Seq_Allele2 .

cs:dbSNP_RS a qb:ComponentSpecification ;
  rdfs:label "dbSNP_RS" ;
  qb:measure prop:dbSNP_RS .

cs:Tumor_Sample_Barcode a qb:ComponentSpecification ;
  rdfs:label "Tumor_Sample_Barcode" ;
  qb:measure prop:Tumor_Sample_Barcode .

cs:Matched_Norm_Sample_Barcode a qb:ComponentSpecification ;
  rdfs:label "Matched_Norm_Sample_Barcode" ;
  qb:measure prop:Matched_Norm_Sample_Barcode .

cs:Match_Norm_Seq_Allele1 a qb:ComponentSpecification ;
  rdfs:label "Match_Norm_Seq_Allele1" ;
  qb:measure prop:Match_Norm_Seq_Allele1 .

cs:Match_Norm_Seq_Allele2 a qb:ComponentSpecification ;
  rdfs:label "Match_Norm_Seq_Allele2" ;
  qb:measure prop:Match_Norm_Seq_Allele2 .

cs:Tumor_Validation_Allele1 a qb:ComponentSpecification ;
  rdfs:label "Tumor_Validation_Allele1" ;
  qb:measure prop:Tumor_Validation_Allele1 .

cs:Tumor_Validation_Allele2 a qb:ComponentSpecification ;
  rdfs:label "Tumor_Validation_Allele2" ;
  qb:measure prop:Tumor_Validation_Allele2 .

cs:Match_Norm_Validation_Allele1 a qb:ComponentSpecification ;
  rdfs:label "Match_Norm_Validation_Allele1" ;
  qb:measure prop:Match_Norm_Validation_Allele1 .

cs:Match_Norm_Validation_Allele2 a qb:ComponentSpecification ;
  rdfs:label "Match_Norm_Validation_Allele2" ;
  qb:measure prop:Match_Norm_Validation_Allele2 .

cs:Sequencing_Phase a qb:ComponentSpecification ;
  rdfs:label "Sequencing_Phase" ;
  qb:measure prop:Sequencing_Phase .

cs:Validation_Method a qb:ComponentSpecification ;
  rdfs:label "Validation_Method" ;
  qb:measure prop:Validation_Method .

cs:Score a qb:ComponentSpecification ;
  rdfs:label "Score" ;
  qb:measure prop:Score .

cs:BAM_File a qb:ComponentSpecification ;
  rdfs:label "BAM_File" ;
  qb:measure prop:BAM_File .

cs:Tumor_Sample_UUID a qb:ComponentSpecification ;
  rdfs:label "Tumor_Sample_UUID" ;
  qb:measure prop:Tumor_Sample_UUID .

cs:Matched_Norm_Sample_UUID a qb:ComponentSpecification ;
  rdfs:label "Matched_Norm_Sample_UUID" ;
  qb:measure prop:Matched_Norm_Sample_UUID .

cs:patient_id a qb:ComponentSpecification ;
  rdfs:label "patient_id" ;
  qb:measure prop:patient_id .

cs:sample_id a qb:ComponentSpecification ;
  rdfs:label "sample_id" ;
  qb:measure prop:sample_id .

prop:Hugo_Symbol a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Hugo_Symbol"@en .

prop:Entrez_Gene_Id a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Entrez_Gene_Id"@en .

prop:Center a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Center"@en ;
  rdfs:range xsd:string .

prop:NCBI_Build a rdf:Property, qb:MeasureProperty ;
  rdfs:label "NCBI_Build"@en ;
  rdfs:range xsd:int .

prop:Chromosome a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Chromosome"@en ;
  rdfs:range xsd:int .

prop:Start_Position a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Start_Position"@en .

prop:End_Position a rdf:Property, qb:MeasureProperty ;
  rdfs:label "End_Position"@en .

prop:Strand a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Strand"@en .

prop:Reference_Allele a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Reference_Allele"@en .

prop:Tumor_Seq_Allele1 a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Tumor_Seq_Allele1"@en .

prop:Tumor_Seq_Allele2 a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Tumor_Seq_Allele2"@en .

prop:dbSNP_RS a rdf:Property, qb:MeasureProperty ;
  rdfs:label "dbSNP_RS"@en .

prop:Tumor_Sample_Barcode a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Tumor_Sample_Barcode"@en ;
  rdfs:range xsd:string .

prop:Matched_Norm_Sample_Barcode a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Matched_Norm_Sample_Barcode"@en .

prop:Match_Norm_Seq_Allele1 a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Match_Norm_Seq_Allele1"@en .

prop:Match_Norm_Seq_Allele2 a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Match_Norm_Seq_Allele2"@en .

prop:Tumor_Validation_Allele1 a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Tumor_Validation_Allele1"@en .

prop:Tumor_Validation_Allele2 a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Tumor_Validation_Allele2"@en .

prop:Match_Norm_Validation_Allele1 a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Match_Norm_Validation_Allele1"@en .

prop:Match_Norm_Validation_Allele2 a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Match_Norm_Validation_Allele2"@en .

prop:Sequencing_Phase a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Sequencing_Phase"@en .

prop:Validation_Method a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Validation_Method"@en .

prop:Score a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Score"@en .

prop:BAM_File a rdf:Property, qb:MeasureProperty ;
  rdfs:label "BAM_File"@en .

prop:Tumor_Sample_UUID a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Tumor_Sample_UUID"@en .

prop:Matched_Norm_Sample_UUID a rdf:Property, qb:MeasureProperty ;
  rdfs:label "Matched_Norm_Sample_UUID"@en .

prop:patient_id a rdf:Property, qb:MeasureProperty ;
  rdfs:label "patient_id"@en .

prop:sample_id a rdf:Property, qb:MeasureProperty ;
  rdfs:label "sample_id"@en .

prop:Variant_Classification a rdf:Property, qb:DimensionProperty ;
  rdfs:label "Variant_Classification"@en ;
  qb:codeList code:variant_classification ;
  rdfs:range code:Variant_classification .

prop:Variant_Type a rdf:Property, qb:DimensionProperty ;
  rdfs:label "Variant_Type"@en ;
  qb:codeList code:variant_type ;
  rdfs:range code:Variant_type .

prop:dbSNP_Val_Status a rdf:Property, qb:DimensionProperty ;
  rdfs:label "dbSNP_Val_Status"@en ;
  qb:codeList code:dbsnp_val_status ;
  rdfs:range code:Dbsnp_val_status .

prop:Verification_Status a rdf:Property, qb:DimensionProperty ;
  rdfs:label "Verification_Status"@en ;
  qb:codeList code:verification_status ;
  rdfs:range code:Verification_status .

prop:Validation_Status a rdf:Property, qb:DimensionProperty ;
  rdfs:label "Validation_Status"@en ;
  qb:codeList code:validation_status ;
  rdfs:range code:Validation_status .

prop:Mutation_Status a rdf:Property, qb:DimensionProperty ;
  rdfs:label "Mutation_Status"@en ;
  qb:codeList code:mutation_status ;
  rdfs:range code:Mutation_status .

prop:Sequence_Source a rdf:Property, qb:DimensionProperty ;
  rdfs:label "Sequence_Source"@en ;
  qb:codeList code:sequence_source ;
  rdfs:range code:Sequence_source .

prop:Sequencer a rdf:Property, qb:DimensionProperty ;
  rdfs:label "Sequencer"@en ;
  qb:codeList code:sequencer ;
  rdfs:range code:Sequencer .

code:Variant_classification a rdfs:Class, owl:Class;
  rdfs:subClassOf skos:Concept ;
  rdfs:label "Code list for variant_classification - codelist class"@en;
  rdfs:comment "Specifies the variant_classification for each observation";
  rdfs:seeAlso code:variant_classification .

code:variant_classification a skos:ConceptScheme;
  skos:prefLabel "Code list for variant_classification - codelist scheme"@en;
  rdfs:label "Code list for variant_classification - codelist scheme"@en;
  skos:notation "CL_VARIANT_CLASSIFICATION";
  skos:note "Specifies the variant_classification for each observation";
  skos:hasTopConcept <code/variant_classification/Frame_Shift_Del> ;
  skos:hasTopConcept <code/variant_classification/Frame_Shift_Ins> ;
  skos:hasTopConcept <code/variant_classification/In_Frame_Del> ;
  skos:hasTopConcept <code/variant_classification/In_Frame_Ins> ;
  skos:hasTopConcept <code/variant_classification/Missense_Mutation> ;
  skos:hasTopConcept <code/variant_classification/Nonsense_Mutation> ;
  skos:hasTopConcept <code/variant_classification/Silent> ;
  skos:hasTopConcept <code/variant_classification/Splice_Site> ;
  skos:hasTopConcept <code/variant_classification/Translation_Start_Site> ;
  skos:hasTopConcept <code/variant_classification/Nonstop_Mutation> ;
  skos:hasTopConcept <code/variant_classification/3'UTR> ;
  skos:hasTopConcept <code/variant_classification/3'Flank> ;
  skos:hasTopConcept <code/variant_classification/5'UTR> ;
  skos:hasTopConcept <code/variant_classification/5'Flank> ;
  skos:hasTopConcept <code/variant_classification/IGR1> ;
  skos:hasTopConcept <code/variant_classification/Intron> ;
  skos:hasTopConcept <code/variant_classification/RNA> ;
  skos:hasTopConcept <code/variant_classification/Targeted_Region> ;
  .

code:Variant_type a rdfs:Class, owl:Class;
  rdfs:subClassOf skos:Concept ;
  rdfs:label "Code list for variant_type - codelist class"@en;
  rdfs:comment "Specifies the variant_type for each observation";
  rdfs:seeAlso code:variant_type .

code:variant_type a skos:ConceptScheme;
  skos:prefLabel "Code list for variant_type - codelist scheme"@en;
  rdfs:label "Code list for variant_type - codelist scheme"@en;
  skos:notation "CL_VARIANT_TYPE";
  skos:note "Specifies the variant_type for each observation";
  skos:hasTopConcept <code/variant_type/SNP> ;
  skos:hasTopConcept <code/variant_type/DNP> ;
  skos:hasTopConcept <code/variant_type/TNP> ;
  skos:hasTopConcept <code/variant_type/ONP> ;
  skos:hasTopConcept <code/variant_type/INS> ;
  skos:hasTopConcept <code/variant_type/DEL> ;
  skos:hasTopConcept <code/variant_type/Consolidated> ;
  .

code:Dbsnp_val_status a rdfs:Class, owl:Class;
  rdfs:subClassOf skos:Concept ;
  rdfs:label "Code list for dbsnp_val_status - codelist class"@en;
  rdfs:comment "Specifies the dbsnp_val_status for each observation";
  rdfs:seeAlso code:dbsnp_val_status .

code:dbsnp_val_status a skos:ConceptScheme;
  skos:prefLabel "Code list for dbsnp_val_status - codelist scheme"@en;
  rdfs:label "Code list for dbsnp_val_status - codelist scheme"@en;
  skos:notation "CL_DBSNP_VAL_STATUS";
  skos:note "Specifies the dbsnp_val_status for each observation";
  skos:hasTopConcept <code/dbsnp_val_status/by1000genomes> ;
  skos:hasTopConcept <code/dbsnp_val_status/by2Hit2Allele> ;
  skos:hasTopConcept <code/dbsnp_val_status/byCluster> ;
  skos:hasTopConcept <code/dbsnp_val_status/byFrequency> ;
  skos:hasTopConcept <code/dbsnp_val_status/byHapMap> ;
  skos:hasTopConcept <code/dbsnp_val_status/byOtherPop> ;
  skos:hasTopConcept <code/dbsnp_val_status/bySubmitter> ;
  skos:hasTopConcept <code/dbsnp_val_status/alternate_allele> ;
  .

code:Verification_status a rdfs:Class, owl:Class;
  rdfs:subClassOf skos:Concept ;
  rdfs:label "Code list for verification_status - codelist class"@en;
  rdfs:comment "Specifies the verification_status for each observation";
  rdfs:seeAlso code:verification_status .

code:verification_status a skos:ConceptScheme;
  skos:prefLabel "Code list for verification_status - codelist scheme"@en;
  rdfs:label "Code list for verification_status - codelist scheme"@en;
  skos:notation "CL_VERIFICATION_STATUS";
  skos:note "Specifies the verification_status for each observation";
  skos:hasTopConcept <code/verification_status/Verified,> ;
  skos:hasTopConcept <code/verification_status/Unknown> ;
  .

code:Validation_status a rdfs:Class, owl:Class;
  rdfs:subClassOf skos:Concept ;
  rdfs:label "Code list for validation_status - codelist class"@en;
  rdfs:comment "Specifies the validation_status for each observation";
  rdfs:seeAlso code:validation_status .

code:validation_status a skos:ConceptScheme;
  skos:prefLabel "Code list for validation_status - codelist scheme"@en;
  rdfs:label "Code list for validation_status - codelist scheme"@en;
  skos:notation "CL_VALIDATION_STATUS";
  skos:note "Specifies the validation_status for each observation";
  skos:hasTopConcept <code/validation_status/Untested> ;
  skos:hasTopConcept <code/validation_status/Inconclusive> ;
  skos:hasTopConcept <code/validation_status/Valid> ;
  skos:hasTopConcept <code/validation_status/Invalid> ;
  .

code:Mutation_status a rdfs:Class, owl:Class;
  rdfs:subClassOf skos:Concept ;
  rdfs:label "Code list for mutation_status - codelist class"@en;
  rdfs:comment "Specifies the mutation_status for each observation";
  rdfs:seeAlso code:mutation_status .

code:mutation_status a skos:ConceptScheme;
  skos:prefLabel "Code list for mutation_status - codelist scheme"@en;
  rdfs:label "Code list for mutation_status - codelist scheme"@en;
  skos:notation "CL_MUTATION_STATUS";
  skos:note "Specifies the mutation_status for each observation";
  skos:hasTopConcept <code/mutation_status/None> ;
  skos:hasTopConcept <code/mutation_status/Germline> ;
  skos:hasTopConcept <code/mutation_status/Somatic> ;
  skos:hasTopConcept <code/mutation_status/LOH> ;
  skos:hasTopConcept <code/mutation_status/Post-transcriptional> ;
  skos:hasTopConcept <code/mutation_status/modification> ;
  skos:hasTopConcept <code/mutation_status/Unknown> ;
  .

code:Sequence_source a rdfs:Class, owl:Class;
  rdfs:subClassOf skos:Concept ;
  rdfs:label "Code list for sequence_source - codelist class"@en;
  rdfs:comment "Specifies the sequence_source for each observation";
  rdfs:seeAlso code:sequence_source .

code:sequence_source a skos:ConceptScheme;
  skos:prefLabel "Code list for sequence_source - codelist scheme"@en;
  rdfs:label "Code list for sequence_source - codelist scheme"@en;
  skos:notation "CL_SEQUENCE_SOURCE";
  skos:note "Specifies the sequence_source for each observation";
  skos:hasTopConcept <code/sequence_source/WGS> ;
  skos:hasTopConcept <code/sequence_source/WGA> ;
  skos:hasTopConcept <code/sequence_source/WXS> ;
  skos:hasTopConcept <code/sequence_source/RNA-Seq> ;
  skos:hasTopConcept <code/sequence_source/miRNA-Seq> ;
  skos:hasTopConcept <code/sequence_source/Bisulfite-Seq> ;
  skos:hasTopConcept <code/sequence_source/VALIDATION> ;
  skos:hasTopConcept <code/sequence_source/Other> ;
  skos:hasTopConcept <code/sequence_source/ncRNA-Seq> ;
  skos:hasTopConcept <code/sequence_source/WCS> ;
  skos:hasTopConcept <code/sequence_source/CLONE> ;
  skos:hasTopConcept <code/sequence_source/POOLCLONE> ;
  skos:hasTopConcept <code/sequence_source/AMPLICON> ;
  skos:hasTopConcept <code/sequence_source/CLONEEND> ;
  skos:hasTopConcept <code/sequence_source/FINISHING> ;
  skos:hasTopConcept <code/sequence_source/ChIP-Seq> ;
  skos:hasTopConcept <code/sequence_source/MNase-Seq> ;
  skos:hasTopConcept <code/sequence_source/DNase-Hypersensitivity> ;
  skos:hasTopConcept <code/sequence_source/EST> ;
  skos:hasTopConcept <code/sequence_source/FL-cDNA> ;
  skos:hasTopConcept <code/sequence_source/CTS> ;
  skos:hasTopConcept <code/sequence_source/MRE-Seq> ;
  skos:hasTopConcept <code/sequence_source/MeDIP-Seq> ;
  skos:hasTopConcept <code/sequence_source/MBD-Seq> ;
  skos:hasTopConcept <code/sequence_source/Tn-Seq> ;
  skos:hasTopConcept <code/sequence_source/FAIRE-seq> ;
  skos:hasTopConcept <code/sequence_source/SELEX> ;
  skos:hasTopConcept <code/sequence_source/RIP-Seq> ;
  skos:hasTopConcept <code/sequence_source/ChIA-PET> ;
  .

code:Sequencer a rdfs:Class, owl:Class;
  rdfs:subClassOf skos:Concept ;
  rdfs:label "Code list for sequencer - codelist class"@en;
  rdfs:comment "Specifies the sequencer for each observation";
  rdfs:seeAlso code:sequencer .

code:sequencer a skos:ConceptScheme;
  skos:prefLabel "Code list for sequencer - codelist scheme"@en;
  rdfs:label "Code list for sequencer - codelist scheme"@en;
  skos:notation "CL_SEQUENCER";
  skos:note "Specifies the sequencer for each observation";
  skos:hasTopConcept <code/sequencer/Illumina_GAIIx> ;
  skos:hasTopConcept <code/sequencer/Illumina_HiSeq> ;
  skos:hasTopConcept <code/sequencer/SOLID> ;
  skos:hasTopConcept <code/sequencer/454> ;
  skos:hasTopConcept <code/sequencer/ABI_3730xl> ;
  skos:hasTopConcept <code/sequencer/Ion_Torrent_PGM> ;
  skos:hasTopConcept <code/sequencer/Ion_Torrent_Proton> ;
  skos:hasTopConcept <code/sequencer/PacBio_RS> ;
  skos:hasTopConcept <code/sequencer/Illumina_MiSeq> ;
  skos:hasTopConcept <code/sequencer/Illumina_HiSeq_2500> ;
  skos:hasTopConcept <code/sequencer/454_GS_FLX_Titanium> ;
  skos:hasTopConcept <code/sequencer/AB_SOLiD_4_System> ;
  .

<code/variant_classification/Frame_Shift_Del> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "Frame_Shift_Del" ;
  skos:inScheme code:variant_classification .

<code/variant_classification/Frame_Shift_Ins> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "Frame_Shift_Ins" ;
  skos:inScheme code:variant_classification .

<code/variant_classification/In_Frame_Del> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "In_Frame_Del" ;
  skos:inScheme code:variant_classification .

<code/variant_classification/In_Frame_Ins> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "In_Frame_Ins" ;
  skos:inScheme code:variant_classification .

<code/variant_classification/Missense_Mutation> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "Missense_Mutation" ;
  skos:inScheme code:variant_classification .

<code/variant_classification/Nonsense_Mutation> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "Nonsense_Mutation" ;
  skos:inScheme code:variant_classification .

<code/variant_classification/Silent> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "Silent" ;
  skos:inScheme code:variant_classification .

<code/variant_classification/Splice_Site> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "Splice_Site" ;
  skos:inScheme code:variant_classification .

<code/variant_classification/Translation_Start_Site> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "Translation_Start_Site" ;
  skos:inScheme code:variant_classification .

<code/variant_classification/Nonstop_Mutation> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "Nonstop_Mutation" ;
  skos:inScheme code:variant_classification .

<code/variant_classification/3'UTR> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "3'UTR" ;
  skos:inScheme code:variant_classification .

<code/variant_classification/3'Flank> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "3'Flank" ;
  skos:inScheme code:variant_classification .

<code/variant_classification/5'UTR> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "5'UTR" ;
  skos:inScheme code:variant_classification .

<code/variant_classification/5'Flank> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "5'Flank" ;
  skos:inScheme code:variant_classification .

<code/variant_classification/IGR1> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "IGR1" ;
  skos:inScheme code:variant_classification .

<code/variant_classification/Intron> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "Intron" ;
  skos:inScheme code:variant_classification .

<code/variant_classification/RNA> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "RNA" ;
  skos:inScheme code:variant_classification .

<code/variant_classification/Targeted_Region> a skos:Concept, code:Variant_classification;
  skos:topConceptOf code:variant_classification ;
  skos:prefLabel "Targeted_Region" ;
  skos:inScheme code:variant_classification .

<code/variant_type/SNP> a skos:Concept, code:Variant_type;
  skos:topConceptOf code:variant_type ;
  skos:prefLabel "SNP" ;
  skos:inScheme code:variant_type .

<code/variant_type/DNP> a skos:Concept, code:Variant_type;
  skos:topConceptOf code:variant_type ;
  skos:prefLabel "DNP" ;
  skos:inScheme code:variant_type .

<code/variant_type/TNP> a skos:Concept, code:Variant_type;
  skos:topConceptOf code:variant_type ;
  skos:prefLabel "TNP" ;
  skos:inScheme code:variant_type .

<code/variant_type/ONP> a skos:Concept, code:Variant_type;
  skos:topConceptOf code:variant_type ;
  skos:prefLabel "ONP" ;
  skos:inScheme code:variant_type .

<code/variant_type/INS> a skos:Concept, code:Variant_type;
  skos:topConceptOf code:variant_type ;
  skos:prefLabel "INS" ;
  skos:inScheme code:variant_type .

<code/variant_type/DEL> a skos:Concept, code:Variant_type;
  skos:topConceptOf code:variant_type ;
  skos:prefLabel "DEL" ;
  skos:inScheme code:variant_type .

<code/variant_type/Consolidated> a skos:Concept, code:Variant_type;
  skos:topConceptOf code:variant_type ;
  skos:prefLabel "Consolidated" ;
  skos:inScheme code:variant_type .

<code/dbsnp_val_status/by1000genomes> a skos:Concept, code:Dbsnp_val_status;
  skos:topConceptOf code:dbsnp_val_status ;
  skos:prefLabel "by1000genomes" ;
  skos:inScheme code:dbsnp_val_status .

<code/dbsnp_val_status/by2Hit2Allele> a skos:Concept, code:Dbsnp_val_status;
  skos:topConceptOf code:dbsnp_val_status ;
  skos:prefLabel "by2Hit2Allele" ;
  skos:inScheme code:dbsnp_val_status .

<code/dbsnp_val_status/byCluster> a skos:Concept, code:Dbsnp_val_status;
  skos:topConceptOf code:dbsnp_val_status ;
  skos:prefLabel "byCluster" ;
  skos:inScheme code:dbsnp_val_status .

<code/dbsnp_val_status/byFrequency> a skos:Concept, code:Dbsnp_val_status;
  skos:topConceptOf code:dbsnp_val_status ;
  skos:prefLabel "byFrequency" ;
  skos:inScheme code:dbsnp_val_status .

<code/dbsnp_val_status/byHapMap> a skos:Concept, code:Dbsnp_val_status;
  skos:topConceptOf code:dbsnp_val_status ;
  skos:prefLabel "byHapMap" ;
  skos:inScheme code:dbsnp_val_status .

<code/dbsnp_val_status/byOtherPop> a skos:Concept, code:Dbsnp_val_status;
  skos:topConceptOf code:dbsnp_val_status ;
  skos:prefLabel "byOtherPop" ;
  skos:inScheme code:dbsnp_val_status .

<code/dbsnp_val_status/bySubmitter> a skos:Concept, code:Dbsnp_val_status;
  skos:topConceptOf code:dbsnp_val_status ;
  skos:prefLabel "bySubmitter" ;
  skos:inScheme code:dbsnp_val_status .

<code/dbsnp_val_status/alternate_allele> a skos:Concept, code:Dbsnp_val_status;
  skos:topConceptOf code:dbsnp_val_status ;
  skos:prefLabel "alternate_allele" ;
  skos:inScheme code:dbsnp_val_status .

<code/verification_status/Verified,> a skos:Concept, code:Verification_status;
  skos:topConceptOf code:verification_status ;
  skos:prefLabel "Verified," ;
  skos:inScheme code:verification_status .

<code/verification_status/Unknown> a skos:Concept, code:Verification_status;
  skos:topConceptOf code:verification_status ;
  skos:prefLabel "Unknown" ;
  skos:inScheme code:verification_status .

<code/validation_status/Untested> a skos:Concept, code:Validation_status;
  skos:topConceptOf code:validation_status ;
  skos:prefLabel "Untested" ;
  skos:inScheme code:validation_status .

<code/validation_status/Inconclusive> a skos:Concept, code:Validation_status;
  skos:topConceptOf code:validation_status ;
  skos:prefLabel "Inconclusive" ;
  skos:inScheme code:validation_status .

<code/validation_status/Valid> a skos:Concept, code:Validation_status;
  skos:topConceptOf code:validation_status ;
  skos:prefLabel "Valid" ;
  skos:inScheme code:validation_status .

<code/validation_status/Invalid> a skos:Concept, code:Validation_status;
  skos:topConceptOf code:validation_status ;
  skos:prefLabel "Invalid" ;
  skos:inScheme code:validation_status .

<code/mutation_status/None> a skos:Concept, code:Mutation_status;
  skos:topConceptOf code:mutation_status ;
  skos:prefLabel "None" ;
  skos:inScheme code:mutation_status .

<code/mutation_status/Germline> a skos:Concept, code:Mutation_status;
  skos:topConceptOf code:mutation_status ;
  skos:prefLabel "Germline" ;
  skos:inScheme code:mutation_status .

<code/mutation_status/Somatic> a skos:Concept, code:Mutation_status;
  skos:topConceptOf code:mutation_status ;
  skos:prefLabel "Somatic" ;
  skos:inScheme code:mutation_status .

<code/mutation_status/LOH> a skos:Concept, code:Mutation_status;
  skos:topConceptOf code:mutation_status ;
  skos:prefLabel "LOH" ;
  skos:inScheme code:mutation_status .

<code/mutation_status/Post-transcriptional> a skos:Concept, code:Mutation_status;
  skos:topConceptOf code:mutation_status ;
  skos:prefLabel "Post-transcriptional" ;
  skos:inScheme code:mutation_status .

<code/mutation_status/modification> a skos:Concept, code:Mutation_status;
  skos:topConceptOf code:mutation_status ;
  skos:prefLabel "modification" ;
  skos:inScheme code:mutation_status .

<code/mutation_status/Unknown> a skos:Concept, code:Mutation_status;
  skos:topConceptOf code:mutation_status ;
  skos:prefLabel "Unknown" ;
  skos:inScheme code:mutation_status .

<code/sequence_source/WGS> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "WGS" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/WGA> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "WGA" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/WXS> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "WXS" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/RNA-Seq> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "RNA-Seq" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/miRNA-Seq> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "miRNA-Seq" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/Bisulfite-Seq> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "Bisulfite-Seq" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/VALIDATION> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "VALIDATION" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/Other> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "Other" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/ncRNA-Seq> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "ncRNA-Seq" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/WCS> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "WCS" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/CLONE> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "CLONE" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/POOLCLONE> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "POOLCLONE" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/AMPLICON> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "AMPLICON" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/CLONEEND> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "CLONEEND" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/FINISHING> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "FINISHING" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/ChIP-Seq> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "ChIP-Seq" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/MNase-Seq> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "MNase-Seq" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/DNase-Hypersensitivity> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "DNase-Hypersensitivity" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/EST> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "EST" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/FL-cDNA> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "FL-cDNA" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/CTS> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "CTS" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/MRE-Seq> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "MRE-Seq" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/MeDIP-Seq> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "MeDIP-Seq" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/MBD-Seq> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "MBD-Seq" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/Tn-Seq> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "Tn-Seq" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/FAIRE-seq> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "FAIRE-seq" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/SELEX> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "SELEX" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/RIP-Seq> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "RIP-Seq" ;
  skos:inScheme code:sequence_source .

<code/sequence_source/ChIA-PET> a skos:Concept, code:Sequence_source;
  skos:topConceptOf code:sequence_source ;
  skos:prefLabel "ChIA-PET" ;
  skos:inScheme code:sequence_source .

<code/sequencer/Illumina_GAIIx> a skos:Concept, code:Sequencer;
  skos:topConceptOf code:sequencer ;
  skos:prefLabel "Illumina_GAIIx" ;
  skos:inScheme code:sequencer .

<code/sequencer/Illumina_HiSeq> a skos:Concept, code:Sequencer;
  skos:topConceptOf code:sequencer ;
  skos:prefLabel "Illumina_HiSeq" ;
  skos:inScheme code:sequencer .

<code/sequencer/SOLID> a skos:Concept, code:Sequencer;
  skos:topConceptOf code:sequencer ;
  skos:prefLabel "SOLID" ;
  skos:inScheme code:sequencer .

<code/sequencer/454> a skos:Concept, code:Sequencer;
  skos:topConceptOf code:sequencer ;
  skos:prefLabel "454" ;
  skos:inScheme code:sequencer .

<code/sequencer/ABI_3730xl> a skos:Concept, code:Sequencer;
  skos:topConceptOf code:sequencer ;
  skos:prefLabel "ABI_3730xl" ;
  skos:inScheme code:sequencer .

<code/sequencer/Ion_Torrent_PGM> a skos:Concept, code:Sequencer;
  skos:topConceptOf code:sequencer ;
  skos:prefLabel "Ion_Torrent_PGM" ;
  skos:inScheme code:sequencer .

<code/sequencer/Ion_Torrent_Proton> a skos:Concept, code:Sequencer;
  skos:topConceptOf code:sequencer ;
  skos:prefLabel "Ion_Torrent_Proton" ;
  skos:inScheme code:sequencer .

<code/sequencer/PacBio_RS> a skos:Concept, code:Sequencer;
  skos:topConceptOf code:sequencer ;
  skos:prefLabel "PacBio_RS" ;
  skos:inScheme code:sequencer .

<code/sequencer/Illumina_MiSeq> a skos:Concept, code:Sequencer;
  skos:topConceptOf code:sequencer ;
  skos:prefLabel "Illumina_MiSeq" ;
  skos:inScheme code:sequencer .

<code/sequencer/Illumina_HiSeq_2500> a skos:Concept, code:Sequencer;
  skos:topConceptOf code:sequencer ;
  skos:prefLabel "Illumina_HiSeq_2500" ;
  skos:inScheme code:sequencer .

<code/sequencer/454_GS_FLX_Titanium> a skos:Concept, code:Sequencer;
  skos:topConceptOf code:sequencer ;
  skos:prefLabel "454_GS_FLX_Titanium" ;
  skos:inScheme code:sequencer .

<code/sequencer/AB_SOLiD_4_System> a skos:Concept, code:Sequencer;
  skos:topConceptOf code:sequencer ;
  skos:prefLabel "AB_SOLiD_4_System" ;
  skos:inScheme code:sequencer .

ns:obs2 a qb:Observation ;
  qb:dataSet ns:dataset-maf_example ;
  prop:Variant_Classification <code/variant_classification/Missense_Mutation> ;
  prop:Variant_Type <code/variant_type/SNP> ;
  prop:dbSNP_Val_Status <code/dbsnp_val_status/> ;
  prop:Verification_Status <code/verification_status/Unknown> ;
  prop:Validation_Status <code/validation_status/Untested> ;
  prop:Mutation_Status <code/mutation_status/Somatic> ;
  prop:Sequence_Source <code/sequence_source/WXS> ;
  prop:Sequencer <code/sequencer/Illumina_GAIIx> ;
  prop:Hugo_Symbol <http://identifiers.org/hgnc.symbol/A1BG> ;
  prop:Center "genome.wustl.edu" ;
  prop:NCBI_Build 37 ;
  prop:Chromosome 19 ;
  prop:Start_Position 58862784 ;
  prop:End_Position 58862784 ;
  prop:Strand "+" ;
  prop:Reference_Allele "C" ;
  prop:Tumor_Seq_Allele1 "C" ;
  prop:Tumor_Seq_Allele2 "T" ;
  prop:dbSNP_RS "novel" ;
  prop:Tumor_Sample_Barcode "TCGA-E9-A22B-01A-11D-A159-09" ;
  prop:Matched_Norm_Sample_Barcode "TCGA-E9-A22B-10A-01D-A159-09" ;
  prop:Match_Norm_Seq_Allele1 "C" ;
  prop:Match_Norm_Seq_Allele2 "C" ;
  prop:Sequencing_Phase "Phase_IV" ;
  prop:Validation_Method "none" ;
  prop:Score 1 ;
  prop:BAM_File "dbGAP" ;
  prop:Tumor_Sample_UUID "e46a5d19-2dd7-4c34-8fff-6276278c58b3" ;
  prop:Matched_Norm_Sample_UUID "f948182a-f814-4e3c-83ee-82b78aa423c1" ;
  prop:patient_id "E9-A22B" ;
  prop:sample_id "01A-11D-A159-09" ;
  .

ns:obs3 a qb:Observation ;
  qb:dataSet ns:dataset-maf_example ;
  prop:Variant_Classification <code/variant_classification/Missense_Mutation> ;
  prop:Variant_Type <code/variant_type/SNP> ;
  prop:dbSNP_Val_Status <code/dbsnp_val_status/byFrequency> ;
  prop:Verification_Status <code/verification_status/Unknown> ;
  prop:Validation_Status <code/validation_status/Untested> ;
  prop:Mutation_Status <code/mutation_status/Somatic> ;
  prop:Sequence_Source <code/sequence_source/WXS> ;
  prop:Sequencer <code/sequencer/Illumina_GAIIx> ;
  prop:Hugo_Symbol <http://identifiers.org/hgnc.symbol/A1BG> ;
  prop:Center "genome.wustl.edu" ;
  prop:NCBI_Build 37 ;
  prop:Chromosome 19 ;
  prop:Start_Position 58864366 ;
  prop:End_Position 58864366 ;
  prop:Strand "+" ;
  prop:Reference_Allele "G" ;
  prop:Tumor_Seq_Allele1 "G" ;
  prop:Tumor_Seq_Allele2 "A" ;
  prop:dbSNP_RS <http://identifiers.org/dbsnp/151098196> ;
  prop:Tumor_Sample_Barcode "TCGA-E9-A1NH-01A-11D-A14G-09" ;
  prop:Matched_Norm_Sample_Barcode "TCGA-E9-A1NH-11A-33D-A14G-09" ;
  prop:Match_Norm_Seq_Allele1 "G" ;
  prop:Match_Norm_Seq_Allele2 "G" ;
  prop:Sequencing_Phase "Phase_IV" ;
  prop:Validation_Method "none" ;
  prop:Score 1 ;
  prop:BAM_File "dbGAP" ;
  prop:Tumor_Sample_UUID "13c312ec-0add-4758-ab8d-c193e2e08c6d" ;
  prop:Matched_Norm_Sample_UUID "0ee95056-a7cc-415c-a487-3ad08604dfc0" ;
  prop:patient_id "E9-A1NH" ;
  prop:sample_id "01A-11D-A14G-09" ;
  .

ns:obs4 a qb:Observation ;
  qb:dataSet ns:dataset-maf_example ;
  prop:Variant_Classification <code/variant_classification/Missense_Mutation> ;
  prop:Variant_Type <code/variant_type/SNP> ;
  prop:dbSNP_Val_Status <code/dbsnp_val_status/> ;
  prop:Verification_Status <code/verification_status/Unknown> ;
  prop:Validation_Status <code/validation_status/Untested> ;
  prop:Mutation_Status <code/mutation_status/Somatic> ;
  prop:Sequence_Source <code/sequence_source/WXS> ;
  prop:Sequencer <code/sequencer/Illumina_GAIIx> ;
  prop:Hugo_Symbol <http://identifiers.org/hgnc.symbol/A1CF> ;
  prop:Entrez_Gene_Id <http://identifiers.org/ncbigene/29974> ;
  prop:Center "genome.wustl.edu" ;
  prop:NCBI_Build 37 ;
  prop:Chromosome 10 ;
  prop:Start_Position 52595854 ;
  prop:End_Position 52595854 ;
  prop:Strand "+" ;
  prop:Reference_Allele "G" ;
  prop:Tumor_Seq_Allele1 "G" ;
  prop:Tumor_Seq_Allele2 "A" ;
  prop:dbSNP_RS "novel" ;
  prop:Tumor_Sample_Barcode "TCGA-BH-A0HP-01A-12D-A099-09" ;
  prop:Matched_Norm_Sample_Barcode "TCGA-BH-A0HP-10A-01D-A099-09" ;
  prop:Match_Norm_Seq_Allele1 "G" ;
  prop:Match_Norm_Seq_Allele2 "G" ;
  prop:Sequencing_Phase "Phase_IV" ;
  prop:Validation_Method "none" ;
  prop:Score 1 ;
  prop:BAM_File "dbGAP" ;
  prop:Tumor_Sample_UUID "ad52a8fb-7a76-4aa0-95fb-d6edab0fe2b2" ;
  prop:Matched_Norm_Sample_UUID "8c059d33-23de-439a-914a-290527c5efbe" ;
  prop:patient_id "BH-A0HP" ;
  prop:sample_id "01A-12D-A099-09" ;
  .

ns:obs5 a qb:Observation ;
  qb:dataSet ns:dataset-maf_example ;
  prop:Variant_Classification <code/variant_classification/Silent> ;
  prop:Variant_Type <code/variant_type/SNP> ;
  prop:dbSNP_Val_Status <code/dbsnp_val_status/> ;
  prop:Verification_Status <code/verification_status/Unknown> ;
  prop:Validation_Status <code/validation_status/Untested> ;
  prop:Mutation_Status <code/mutation_status/Somatic> ;
  prop:Sequence_Source <code/sequence_source/WXS> ;
  prop:Sequencer <code/sequencer/Illumina_GAIIx> ;
  prop:Hugo_Symbol <http://identifiers.org/hgnc.symbol/A1CF> ;
  prop:Entrez_Gene_Id <http://identifiers.org/ncbigene/29974> ;
  prop:Center "genome.wustl.edu" ;
  prop:NCBI_Build 37 ;
  prop:Chromosome 10 ;
  prop:Start_Position 52595937 ;
  prop:End_Position 52595937 ;
  prop:Strand "+" ;
  prop:Reference_Allele "G" ;
  prop:Tumor_Seq_Allele1 "G" ;
  prop:Tumor_Seq_Allele2 "A" ;
  prop:dbSNP_RS "novel" ;
  prop:Tumor_Sample_Barcode "TCGA-BH-A18P-01A-11D-A12B-09" ;
  prop:Matched_Norm_Sample_Barcode "TCGA-BH-A18P-11A-43D-A12B-09" ;
  prop:Match_Norm_Seq_Allele1 "G" ;
  prop:Match_Norm_Seq_Allele2 "G" ;
  prop:Sequencing_Phase "Phase_IV" ;
  prop:Validation_Method "none" ;
  prop:Score 1 ;
  prop:BAM_File "dbGAP" ;
  prop:Tumor_Sample_UUID "add624a3-57e9-46be-9bcc-3e53d7c2dfb7" ;
  prop:Matched_Norm_Sample_UUID "5cae8dca-b28a-4483-9c03-6f0645161c04" ;
  prop:patient_id "BH-A18P" ;
  prop:sample_id "01A-11D-A12B-09" ;
  .

ns:obs6 a qb:Observation ;
  qb:dataSet ns:dataset-maf_example ;
  prop:Variant_Classification <code/variant_classification/Silent> ;
  prop:Variant_Type <code/variant_type/SNP> ;
  prop:dbSNP_Val_Status <code/dbsnp_val_status/> ;
  prop:Verification_Status <code/verification_status/Unknown> ;
  prop:Validation_Status <code/validation_status/Untested> ;
  prop:Mutation_Status <code/mutation_status/Somatic> ;
  prop:Sequence_Source <code/sequence_source/WXS> ;
  prop:Sequencer <code/sequencer/Illumina_GAIIx> ;
  prop:Hugo_Symbol <http://identifiers.org/hgnc.symbol/A2BP1> ;
  prop:Center "genome.wustl.edu" ;
  prop:NCBI_Build 37 ;
  prop:Chromosome 16 ;
  prop:Start_Position 7568361 ;
  prop:End_Position 7568361 ;
  prop:Strand "+" ;
  prop:Reference_Allele "G" ;
  prop:Tumor_Seq_Allele1 "G" ;
  prop:Tumor_Seq_Allele2 "C" ;
  prop:dbSNP_RS "novel" ;
  prop:Tumor_Sample_Barcode "TCGA-D8-A1JN-01A-11D-A13L-09" ;
  prop:Matched_Norm_Sample_Barcode "TCGA-D8-A1JN-10A-01D-A13O-09" ;
  prop:Match_Norm_Seq_Allele1 "G" ;
  prop:Match_Norm_Seq_Allele2 "G" ;
  prop:Sequencing_Phase "Phase_IV" ;
  prop:Validation_Method "none" ;
  prop:Score 1 ;
  prop:BAM_File "dbGAP" ;
  prop:Tumor_Sample_UUID "c83c7d48-8671-4f27-b3dd-05411fa2f784" ;
  prop:Matched_Norm_Sample_UUID "c14cac2a-e308-44fa-b1af-ee51511ee0ee" ;
  prop:patient_id "D8-A1JN" ;
  prop:sample_id "01A-11D-A13L-09" ;
  .

ns:obs7 a qb:Observation ;
  qb:dataSet ns:dataset-maf_example ;
  prop:Variant_Classification <code/variant_classification/Missense_Mutation> ;
  prop:Variant_Type <code/variant_type/SNP> ;
  prop:dbSNP_Val_Status <code/dbsnp_val_status/> ;
  prop:Verification_Status <code/verification_status/Unknown> ;
  prop:Validation_Status <code/validation_status/Valid> ;
  prop:Mutation_Status <code/mutation_status/Somatic> ;
  prop:Sequence_Source <code/sequence_source/WXS> ;
  prop:Sequencer <code/sequencer/Illumina_GAIIx> ;
  prop:Hugo_Symbol <http://identifiers.org/hgnc.symbol/A2BP1> ;
  prop:Entrez_Gene_Id <http://identifiers.org/ncbigene/54715> ;
  prop:Center "genome.wustl.edu" ;
  prop:NCBI_Build 37 ;
  prop:Chromosome 16 ;
  prop:Start_Position 7102099 ;
  prop:End_Position 7102099 ;
  prop:Strand "+" ;
  prop:Reference_Allele "G" ;
  prop:Tumor_Seq_Allele1 "G" ;
  prop:Tumor_Seq_Allele2 "T" ;
  prop:dbSNP_RS "novel" ;
  prop:Tumor_Sample_Barcode "TCGA-E2-A1BC-01A-11D-A14G-09" ;
  prop:Matched_Norm_Sample_Barcode "TCGA-E2-A1BC-10A-01D-A12Q-09" ;
  prop:Match_Norm_Seq_Allele1 "G" ;
  prop:Match_Norm_Seq_Allele2 "G" ;
  prop:Tumor_Validation_Allele1 "G" ;
  prop:Tumor_Validation_Allele2 "T" ;
  prop:Match_Norm_Validation_Allele1 "G" ;
  prop:Match_Norm_Validation_Allele2 "G" ;
  prop:Sequencing_Phase "Phase_IV" ;
  prop:Validation_Method "Illumina_WXS_gDNA" ;
  prop:Score 1 ;
  prop:BAM_File "dbGAP" ;
  prop:Tumor_Sample_UUID "5947a9db-7d13-44ff-86ad-eb5e6c8dcec5" ;
  prop:Matched_Norm_Sample_UUID "6a4cd52f-2247-4caf-9b37-e90b02fd4d8b" ;
  prop:patient_id "E2-A1BC" ;
  prop:sample_id "01A-11D-A14G-09" ;
  .