--- !ruby/object:Gem::Specification
name: bio-gff3
version: !ruby/object:Gem::Version
  version: 0.8.7
  prerelease: 
platform: ruby
authors:
- Pjotr Prins
autorequire: 
bindir: bin
cert_chain: []
date: 2011-07-31 00:00:00.000000000Z
dependencies:
- !ruby/object:Gem::Dependency
  name: bio
  requirement: &76668620 !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 1.3.1
  type: :runtime
  prerelease: false
  version_requirements: *76668620
- !ruby/object:Gem::Dependency
  name: log4r
  requirement: &76668160 !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>'
      - !ruby/object:Gem::Version
        version: 1.1.6
  type: :runtime
  prerelease: false
  version_requirements: *76668160
- !ruby/object:Gem::Dependency
  name: bio-logger
  requirement: &76667770 !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>'
      - !ruby/object:Gem::Version
        version: 0.8.0
  type: :runtime
  prerelease: false
  version_requirements: *76667770
- !ruby/object:Gem::Dependency
  name: shoulda
  requirement: &76667270 !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: '0'
  type: :development
  prerelease: false
  version_requirements: *76667270
- !ruby/object:Gem::Dependency
  name: bundler
  requirement: &76666730 !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ~>
      - !ruby/object:Gem::Version
        version: 1.0.0
  type: :development
  prerelease: false
  version_requirements: *76666730
- !ruby/object:Gem::Dependency
  name: jeweler
  requirement: &76662470 !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ~>
      - !ruby/object:Gem::Version
        version: 1.5.2
  type: :development
  prerelease: false
  version_requirements: *76662470
- !ruby/object:Gem::Dependency
  name: rcov
  requirement: &76662040 !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: '0'
  type: :development
  prerelease: false
  version_requirements: *76662040
- !ruby/object:Gem::Dependency
  name: rspec
  requirement: &76661550 !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 2.3.0
  type: :development
  prerelease: false
  version_requirements: *76661550
description: ! 'GFF3 (genome browser) information and digest mRNA and CDS sequences.

  Options for low memory use and caching of records.

  Support for external FASTA files.

'
email: pjotr.prins@thebird.nl
executables:
- gff3-fetch
extensions: []
extra_rdoc_files:
- LICENSE.txt
- README.rdoc
files:
- Gemfile
- Gemfile.lock
- LICENSE.txt
- README.rdoc
- Rakefile
- VERSION
- bin/gff3-fetch
- bio-gff3.gemspec
- lib/bio-gff3.rb
- lib/bio/db/gff/block/gffblockparser.rb
- lib/bio/db/gff/digest/gffinmemory.rb
- lib/bio/db/gff/digest/gfflrucache.rb
- lib/bio/db/gff/digest/gffnocache.rb
- lib/bio/db/gff/digest/gffparser.rb
- lib/bio/db/gff/file/gfffasta.rb
- lib/bio/db/gff/file/gfffileiterator.rb
- lib/bio/db/gff/gff3.rb
- lib/bio/db/gff/gff3fasta.rb
- lib/bio/db/gff/gff3parsefile.rb
- lib/bio/db/gff/gff3parserec.rb
- lib/bio/db/gff/gffcomponent.rb
- lib/bio/db/gff/gffrecord.rb
- lib/bio/db/gff/gffsection.rb
- lib/bio/db/gff/gffsequence.rb
- lib/bio/db/gff/gffvalidate.rb
- lib/bio/output/gfffastawriter.rb
- lib/bio/output/gfflogger.rb
- lib/bio/system/lruhash.rb
- spec/gff3_assemble2_spec.rb
- spec/gff3_assemble3_spec.rb
- spec/gff3_assemble_spec.rb
- spec/gff3_fileiterator_spec.rb
- spec/gffdb_spec.rb
- spec/gffparserec.rb
- test/data/gff/MhA1_Contig1133.fa
- test/data/gff/MhA1_Contig1133.gff3
- test/data/gff/MhA1_Contig125.fa
- test/data/gff/MhA1_Contig125.gff3
- test/data/gff/standard.gff3
- test/data/gff/test-cds.gff3
- test/data/gff/test-ext-fasta.fa
- test/data/gff/test-ext-fasta.gff3
- test/data/gff/test.gff3
- test/data/regression/test_ext_gff3.rtest
- test/data/regression/test_gff3.rtest
- test/data/regression/test_lrucache_ext_gff3.rtest
- test/data/regression/test_lrucache_gff3.rtest
- test/data/regression/test_nocache_ext_gff3.rtest
- test/data/regression/test_nocache_gff3.rtest
- test/helper.rb
- test/regressiontest.rb
- test/test_bio-gff3.rb
homepage: https://github.com/pjotrp/bioruby-gff3-plugin
licenses:
- MIT
post_install_message: 
rdoc_options: []
require_paths:
- lib
required_ruby_version: !ruby/object:Gem::Requirement
  none: false
  requirements:
  - - ! '>='
    - !ruby/object:Gem::Version
      version: '0'
required_rubygems_version: !ruby/object:Gem::Requirement
  none: false
  requirements:
  - - ! '>='
    - !ruby/object:Gem::Version
      version: '0'
requirements: []
rubyforge_project: 
rubygems_version: 1.8.6
signing_key: 
specification_version: 3
summary: GFF3 parser for big data
test_files:
- spec/gff3_assemble2_spec.rb
- spec/gff3_assemble3_spec.rb
- spec/gff3_assemble_spec.rb
- spec/gff3_fileiterator_spec.rb
- spec/gffdb_spec.rb
- spec/gffparserec.rb
- test/helper.rb
- test/regressiontest.rb
- test/test_bio-gff3.rb