--- !ruby/object:Gem::Specification 
name: mspire
version: !ruby/object:Gem::Version 
  prerelease: 
  version: 0.6.1
platform: ruby
authors: 
- John T. Prince
- Simon Chiang
autorequire: 
bindir: bin
cert_chain: []

date: 2012-01-25 00:00:00 Z
dependencies: 
- !ruby/object:Gem::Dependency 
  name: nokogiri
  prerelease: false
  requirement: &id001 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ~>
      - !ruby/object:Gem::Version 
        version: "1.5"
  type: :runtime
  version_requirements: *id001
- !ruby/object:Gem::Dependency 
  name: rspec
  prerelease: false
  requirement: &id002 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ~>
      - !ruby/object:Gem::Version 
        version: "2.6"
  type: :development
  version_requirements: *id002
- !ruby/object:Gem::Dependency 
  name: jeweler
  prerelease: false
  requirement: &id003 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ~>
      - !ruby/object:Gem::Version 
        version: 1.5.2
  type: :development
  version_requirements: *id003
- !ruby/object:Gem::Dependency 
  name: rcov
  prerelease: false
  requirement: &id004 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        version: "0"
  type: :development
  version_requirements: *id004
- !ruby/object:Gem::Dependency 
  name: obo
  prerelease: false
  requirement: &id005 !ruby/object:Gem::Requirement 
    none: false
    requirements: 
    - - ">="
      - !ruby/object:Gem::Version 
        version: 0.1.0
  type: :development
  version_requirements: *id005
description: mass spectrometry proteomics, lipidomics, and tools, a rewrite of mspire, merging of ms-* gems
email: jtprince@gmail.com
executables: []

extensions: []

extra_rdoc_files: 
- LICENSE
- README.rdoc
files: 
- LICENSE
- README.rdoc
- Rakefile
- VERSION
- lib/cv.rb
- lib/cv/description.rb
- lib/cv/param.rb
- lib/io/bookmark.rb
- lib/merge.rb
- lib/ms.rb
- lib/ms/cvlist.rb
- lib/ms/digester.rb
- lib/ms/fasta.rb
- lib/ms/ident.rb
- lib/ms/ident/peptide.rb
- lib/ms/ident/peptide/db.rb
- lib/ms/ident/peptide_hit.rb
- lib/ms/ident/peptide_hit/qvalue.rb
- lib/ms/ident/pepxml.rb
- lib/ms/ident/pepxml/modifications.rb
- lib/ms/ident/pepxml/msms_pipeline_analysis.rb
- lib/ms/ident/pepxml/msms_run_summary.rb
- lib/ms/ident/pepxml/parameters.rb
- lib/ms/ident/pepxml/sample_enzyme.rb
- lib/ms/ident/pepxml/search_database.rb
- lib/ms/ident/pepxml/search_hit.rb
- lib/ms/ident/pepxml/search_hit/modification_info.rb
- lib/ms/ident/pepxml/search_result.rb
- lib/ms/ident/pepxml/search_summary.rb
- lib/ms/ident/pepxml/spectrum_query.rb
- lib/ms/ident/protein.rb
- lib/ms/ident/protein_group.rb
- lib/ms/ident/search.rb
- lib/ms/isotope/aa.rb
- lib/ms/mascot.rb
- lib/ms/mass.rb
- lib/ms/mass/aa.rb
- lib/ms/mzml.rb
- lib/ms/mzml/index_list.rb
- lib/ms/mzml/plms1.rb
- lib/ms/obo.rb
- lib/ms/plms1.rb
- lib/ms/quant/qspec.rb
- lib/ms/quant/qspec/protein_group_comparison.rb
- lib/ms/spectrum.rb
- lib/msplat.rb
- lib/obo/ims.rb
- lib/obo/ms.rb
- lib/obo/ontology.rb
- lib/obo/unit.rb
- lib/openany.rb
- lib/write_file_or_string.rb
- obo/ims.obo
- obo/ms.obo
- obo/unit.obo
- spec/ms/cvlist_spec.rb
- spec/ms/digester_spec.rb
- spec/ms/fasta_spec.rb
- spec/ms/ident/peptide/db_spec.rb
- spec/ms/ident/pepxml/sample_enzyme_spec.rb
- spec/ms/ident/pepxml/search_hit/modification_info_spec.rb
- spec/ms/ident/pepxml_spec.rb
- spec/ms/ident/protein_group_spec.rb
- spec/ms/mass_spec.rb
- spec/ms/mzml/index_list_spec.rb
- spec/ms/mzml/plms1_spec.rb
- spec/ms/mzml_spec.rb
- spec/ms/plms1_spec.rb
- spec/ms/quant/qspec_spec.rb
- spec/msplat_spec.rb
- spec/obo_spec.rb
- spec/spec_helper.rb
- spec/testfiles/ms/ident/peptide/db/uni_11_sp_tr.fasta
- spec/testfiles/ms/ident/peptide/db/uni_11_sp_tr.msd_clvg2.min_aaseq4.yml
- spec/testfiles/ms/mzml/j24z.idx_comp.3.mzML
- spec/testfiles/ms/mzml/openms.noidx_nocomp.12.mzML
- spec/testfiles/ms/quant/kill_extra_tabs.rb
- spec/testfiles/ms/quant/max_quant_output.provenance.txt
- spec/testfiles/ms/quant/max_quant_output.txt
- spec/testfiles/ms/quant/pdcd5_final.killedextratabs.tsv
- spec/testfiles/ms/quant/pdcd5_final.killedextratabs.tsv_qspecgp
- spec/testfiles/ms/quant/pdcd5_final.killedextratabs.tsv_qspecgp.csv
- spec/testfiles/ms/quant/pdcd5_final.txt
- spec/testfiles/ms/quant/pdcd5_final.txt_qspecgp
- spec/testfiles/ms/quant/pdcd5_lfq_qspec.CSV.csv
- spec/testfiles/ms/quant/pdcd5_lfq_qspec.csv
- spec/testfiles/ms/quant/pdcd5_lfq_qspec.oneprot.csv
- spec/testfiles/ms/quant/pdcd5_lfq_qspec.oneprot.tsv
- spec/testfiles/ms/quant/pdcd5_lfq_qspec.oneprot.tsv_qspecgp
- spec/testfiles/ms/quant/pdcd5_lfq_qspec.oneprot.tsv_qspecgp.csv
- spec/testfiles/ms/quant/pdcd5_lfq_qspec.txt
- spec/testfiles/ms/quant/pdcd5_lfq_tabdel.txt
- spec/testfiles/ms/quant/pdcd5_lfq_tabdel.txt_qspecgp
- spec/testfiles/ms/quant/remove_rest_of_proteins.rb
- spec/testfiles/ms/quant/unlog_transform.rb
- spec/testfiles/plms1/output.key
homepage: http://github.com/princelab/mspire
licenses: 
- MIT
post_install_message: 
rdoc_options: []

require_paths: 
- lib
required_ruby_version: !ruby/object:Gem::Requirement 
  none: false
  requirements: 
  - - ">="
    - !ruby/object:Gem::Version 
      version: "0"
required_rubygems_version: !ruby/object:Gem::Requirement 
  none: false
  requirements: 
  - - ">="
    - !ruby/object:Gem::Version 
      version: "0"
requirements: []

rubyforge_project: 
rubygems_version: 1.8.10
signing_key: 
specification_version: 3
summary: mass spectrometry proteomics, lipidomics, and tools
test_files: []