Contents

require File.expand_path(File.dirname(__FILE__) + '/../../../test_helper')
require 'rbbt/persist'
require 'rbbt/persist/tsv'
require 'rbbt/annotations'
require 'rbbt/util/tmpfile'
require 'test/unit'

module TestAnnotation
  extend Annotation

  self.annotation :test_annotation
end

class TestPersistTSVKC < Test::Unit::TestCase
  if Persist.respond_to? :open_kyotocabinet
    def _test_organism_kch
      require 'rbbt/sources/organism'
      TmpFile.with_file do |tmp_file|
        tsv = Organism.identifiers("Hsa").tsv :key_field => "Associated Gene Name", :fields => ["Ensembl Gene ID"], :type => :single, :persist => true, :persist_engine => "kch", :persist_dir => tmp_file
        assert_equal "ENSG00000141510", tsv["TP53"]
      end
    end


    def _test_organism_kct
      require 'rbbt/sources/organism'
      TmpFile.with_file do |tmp_file|
        tsv = Organism.identifiers("Hsa").tsv :key_field => "Associated Gene Name", :fields => ["Ensembl Gene ID"], :type => :single, :persist => true, :persist_engine => "kct", :persist_dir => tmp_file
        assert_equal "ENSG00000141510", tsv["TP53"]
      end
    end
  end
end

Version data entries

664 entries across 664 versions & 1 rubygems

Version	Path
rbbt-util-5.28.9	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.28.8	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.28.7	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.28.6	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.28.5	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.28.4	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.28.2	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.28.1	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.28.0	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.27.13	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.27.12	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.27.11	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.27.10	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.27.9	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.27.8	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.27.7	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.27.6	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.27.5	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.27.4	test/rbbt/persist/tsv/test_kyotocabinet.rb
rbbt-util-5.27.3	test/rbbt/persist/tsv/test_kyotocabinet.rb