Sha256: aff7f0576d52a8f5d9409d2849d19d9e4fdfe72699170f25292af7d04c199531

Contents?: true

Size: 559 Bytes

Versions: 66

Compression:

Stored size: 559 Bytes

Contents

#{{{ FINDER
finder = Finder.new
if ENV['RBBT_FINDER']
  organism = Organism.default_code("Hsa")
  finder.add_instance(KEGG.pathways, :grep => '^hsa\|^#', :fields => ["Pathway Name"], :namespace => organism, :fix => Proc.new{|l| l.sub(/ - Homo sapiens.*/,'')}) if defined? KEGG
  finder.add_instance(Organism.lexicon(organism), :persist => true, :namespace => organism, :grep => Organism.blacklist_genes(organism).list, :invert_grep => true) if defined? Organism
end
set :finder, finder
Log.debug("Finder started with: #{finder.instances.length} instances")


Version data entries

66 entries across 66 versions & 1 rubygems

Version Path
rbbt-util-5.17.61 etc/app.d/finder.rb
rbbt-util-5.17.60 etc/app.d/finder.rb
rbbt-util-5.17.59 etc/app.d/finder.rb
rbbt-util-5.17.58 etc/app.d/finder.rb
rbbt-util-5.17.57 etc/app.d/finder.rb
rbbt-util-5.17.56 etc/app.d/finder.rb
rbbt-util-5.17.55 etc/app.d/finder.rb
rbbt-util-5.17.54 etc/app.d/finder.rb
rbbt-util-5.17.53 etc/app.d/finder.rb
rbbt-util-5.17.52 etc/app.d/finder.rb
rbbt-util-5.17.51 etc/app.d/finder.rb
rbbt-util-5.17.50 etc/app.d/finder.rb
rbbt-util-5.17.49 etc/app.d/finder.rb
rbbt-util-5.17.48 etc/app.d/finder.rb
rbbt-util-5.17.47 etc/app.d/finder.rb
rbbt-util-5.17.46 etc/app.d/finder.rb
rbbt-util-5.17.45 etc/app.d/finder.rb
rbbt-util-5.17.44 etc/app.d/finder.rb
rbbt-util-5.17.43 etc/app.d/finder.rb
rbbt-util-5.17.42 etc/app.d/finder.rb