Contents

#{{{ FINDER
finder = Finder.new
if ENV['RBBT_FINDER']
  organism = Organism.default_code("Hsa")
  finder.add_instance(KEGG.pathways, :grep => '^hsa\|^#', :fields => ["Pathway Name"], :namespace => organism, :fix => Proc.new{|l| l.sub(/ - Homo sapiens.*/,'')}) if defined? KEGG
  finder.add_instance(Organism.lexicon(organism), :persist => true, :namespace => organism, :grep => Organism.blacklist_genes(organism).list, :invert_grep => true) if defined? Organism
end
set :finder, finder
Log.debug("Finder started with: #{finder.instances.length} instances")

Version data entries

66 entries across 66 versions & 1 rubygems

Version	Path
rbbt-util-5.17.61	etc/app.d/finder.rb
rbbt-util-5.17.60	etc/app.d/finder.rb
rbbt-util-5.17.59	etc/app.d/finder.rb
rbbt-util-5.17.58	etc/app.d/finder.rb
rbbt-util-5.17.57	etc/app.d/finder.rb
rbbt-util-5.17.56	etc/app.d/finder.rb
rbbt-util-5.17.55	etc/app.d/finder.rb
rbbt-util-5.17.54	etc/app.d/finder.rb
rbbt-util-5.17.53	etc/app.d/finder.rb
rbbt-util-5.17.52	etc/app.d/finder.rb
rbbt-util-5.17.51	etc/app.d/finder.rb
rbbt-util-5.17.50	etc/app.d/finder.rb
rbbt-util-5.17.49	etc/app.d/finder.rb
rbbt-util-5.17.48	etc/app.d/finder.rb
rbbt-util-5.17.47	etc/app.d/finder.rb
rbbt-util-5.17.46	etc/app.d/finder.rb
rbbt-util-5.17.45	etc/app.d/finder.rb
rbbt-util-5.17.44	etc/app.d/finder.rb
rbbt-util-5.17.43	etc/app.d/finder.rb
rbbt-util-5.17.42	etc/app.d/finder.rb