Sha256: aff7f0576d52a8f5d9409d2849d19d9e4fdfe72699170f25292af7d04c199531
Contents?: true
Size: 559 Bytes
Versions: 66
Compression:
Stored size: 559 Bytes
Contents
#{{{ FINDER finder = Finder.new if ENV['RBBT_FINDER'] organism = Organism.default_code("Hsa") finder.add_instance(KEGG.pathways, :grep => '^hsa\|^#', :fields => ["Pathway Name"], :namespace => organism, :fix => Proc.new{|l| l.sub(/ - Homo sapiens.*/,'')}) if defined? KEGG finder.add_instance(Organism.lexicon(organism), :persist => true, :namespace => organism, :grep => Organism.blacklist_genes(organism).list, :invert_grep => true) if defined? Organism end set :finder, finder Log.debug("Finder started with: #{finder.instances.length} instances")
Version data entries
66 entries across 66 versions & 1 rubygems