Sha256: af83cc8e4e384669efe2ba71334f031e441e33b4da04151076442b3dfea5a982
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Size: 687 Bytes
Versions: 13
Compression:
Stored size: 687 Bytes
Contents
require 'andand'
module MS ; end
module MS::Ident
module ProteinLike
# an id for the protein
attr_accessor :id
# the protein sequence
attr_accessor :sequence
alias_method :seq, :sequence
alias_method :seq=, :sequence=
# a description of the protein
attr_accessor :description
# if the GN=([^\s]+) regexp is found in the description, returns the first
# match, or nil if not found
def gene_id
description.andand[/ GN=(\w+) ?/, 1]
end
end
# a generic protein class that is ProteinLike
class Protein
include ProteinLike
def initialize(id=nil, sequence=nil)
(@id, @sequence) = id, sequence
end
end
end
Version data entries
13 entries across 13 versions & 1 rubygems