Contents

#
# test/unit/bio/db/kegg/test_genes.rb - Unit test for Bio::KEGG::GENES
#
# Copyright::  Copyright (C) 2005 Mitsuteru Nakao <[e-mail]>
# License::    The Ruby License
#
#  $Id:$
#

# loading helper routine for testing bioruby
require 'pathname'
load Pathname.new(File.join(File.dirname(__FILE__), ['..'] * 4,
                            'bioruby_test_helper.rb')).cleanpath.to_s

# libraries needed for the tests
require 'test/unit'
require 'bio/db/kegg/genes'

module Bio
  class TestKeggGenesStructure < Test::Unit::TestCase
    def setup
      entry =<<END
STRUCTURE   PDB: 1A9X 1CS0 1C30 1T36 1M6V 1KEE 1C3O 1CE8 1BXR 1JDB
END
      @obj = Bio::KEGG::GENES.new(entry)
    end
    
    def test_data
      str = "STRUCTURE   PDB: 1A9X 1CS0 1C30 1T36 1M6V 1KEE 1C3O 1CE8 1BXR 1JDB"
      assert_equal(str, @obj.instance_eval('get("STRUCTURE")'))
    end

    def test_ids_in_array
      assert_equal(Array, @obj.structure.class)
    end

    def test_ids
      expected = %w( 1A9X 1CS0 1C30 1T36 1M6V 1KEE 1C3O 1CE8 1BXR 1JDB )
      assert_equal(expected, @obj.structure)
      assert_equal(expected, @obj.structures)
    end

  end


  class TestKeggGenesDblinks < Test::Unit::TestCase

    def setup
      entry =<<END
DBLINKS     TIGR: At3g05560
            NCBI-GI: 15230008  42572267
END
      @obj = Bio::KEGG::GENES.new(entry)
    end

    def test_data
      str = "DBLINKS     TIGR: At3g05560\n            NCBI-GI: 15230008  42572267"
      assert_equal(str, @obj.instance_eval('get("DBLINKS")'))
    end

    def test_dblinks_0
      assert_equal(Hash, @obj.dblinks.class)
    end

    def test_dblinks_1
      assert_equal(['At3g05560'], @obj.dblinks['TIGR'])
    end

    def test_dblinks_2
      assert_equal(['15230008', '42572267'], @obj.dblinks['NCBI-GI'])
    end
  end
end

Version data entries

1 entries across 1 versions & 1 rubygems

Version	Path
bio-1.4.0	test/unit/bio/db/kegg/test_genes.rb