Ticket #41: 1cy0.html

File 1cy0.html, 63.9 kB (added by alexgutteridge, 1 month ago)
html

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5	<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
6	<html lang="en">
7	<head>
8	<link rel="alternate" type="application/rss+xml" title="RCSB PDB - Latest Released Structures" href="/pdb/rss/LastLoad">
9	<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
10	<title>RCSB PDB : Structure Explorer</title>
11	<link rel="shortcut icon" href="/pdbstatic/images/pdb.ico" type="image/x-icon">
12	<link rel="stylesheet" href="/pdb/skins/pastel/styles/pdbcomp.css" type="text/css">
13
14	<!-- please read /pdbstatic/common/lib/comp.js.README if you need to modify some javascript for the site -->
15	<script type="text/javascript" language="JavaScript" src="/pdbstatic/common/lib/comp.js"></script>
16	<script type="text/javascript" language="JavaScript" src="/pdbstatic/common/lib/expandable.js"></script>
17	<script type="text/javascript" language="JavaScript" src="/pdbstatic/common/lib/results.js"></script>
18	<script type="text/javascript" language="JavaScript" src="/pdbstatic/common/lib/pdbajax.js"></script>
19	<script type="text/javascript" language="JavaScript" src="/pdbstatic/common/lib/htmlhttprequest_commented.js"></script>
20
21
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30
31
32	<script type="text/javascript" language="JavaScript">
33
34	var resultSorts = new Array();
35
36	function openWindow(url){
37	var w = window.open ("", "win", "height=600,width=800,location,menubar,resizable,scrollbars,status,toolbar");
38	w.location.href = url;
39	w.focus();
40	}
41	function openWindowToSize(url,width,height){
42	var w = window.open ("", "win", "height="+height+",width="+width+",left=80,top=100,location,menubar,resizable,scrollbars,status,toolbar");
43	w.location.href = url;
44	w.focus();
45	}
46
47	// due to the poor way that the treeview code generates the fullLink, we need to have
48	// our openWindowFromNav method use numbers to reference a site if the href has any quotes
49	var roboloc = '/robohelp/';
50	navsites = [
51	"http://deposit.rcsb.org",
52	"http://sg.pdb.org",
53	"http://targetdb.pdb.org",
54	"http://function.rcsb.org:8080/pdb/function_distribution/index.html",
55	"http://mmcif.pdb.org",
56	"http://pdbml.rcsb.org",
57	"http://sw-tools.pdb.org",
58	"http://deposit.pdb.org/cc_dict_tut.html",
59	"http://pepcdb.pdb.org/"
60
61	];
62	helpsites = [
63	"data_deposition_and_processing/how_to_deposit.htm",
64	"validation_server/how_to_validate.htm",
65	"data_download/how_to_download.htm",
66	"search_database/how_to_search.htm",
67	"browse_database/how_to_browse.htm",
68	"molecular_viewers/introduction_to_molecular_viewers.htm",
69	"files_formats/structures/chemical_component_format/chemical_component_introduction.htm",
70	"data_download/structure_download.htm", // 7
71	"data_download/ftp_services.htm", // 8
72	"data_download/theoretical_models.htm", //9
73	"data_download/cd_rom_dvd.htm", //10
74	"structuralgenomics/sg_home.htm",
75	"structuralgenomics/targetdb.htm",
76	"structuralgenomics/pepcdb.htm",
77	"structuralgenomics/function_distributions.htm", // 14
78	"files_formats/intro_dictionaries_file_formats.htm", //15
79	"software/tools/deposition_mmcif_tools.htm", //16
80	"data_deposition_and_processing/how_to_deposit.htm", //17
81	"data_deposition_and_processing/deposition_tools_at_a_glance.htm", //18
82	"site_navigation/citing_the_pdb.htm" //19
83	];
84	navalerts = [
85	"Discussion Forums are not yet active. Please check back later."
86	];
87	function openWindowFromNav(urltype, urlnumber)
88	{
89	if (urltype == 0) // new windows
90	{
91	// window.open (navsites[urlnumber], "win", "height=600,width=800,location,menubar,resizable,scrollbars,status,toolbar");
92	openWindow(navsites[urlnumber]);
93	}
94	else if (urltype == 1) // robo window
95	{
96	callHelp(roboloc, helpsites[urlnumber]);
97	}
98	else if (urltype == 2) // javascript alerts
99	{
100	alert(navalerts[urlnumber]);
101	}
102	}
103
104
105	// You can find instructions for this file at http://www.treeview.net
106
107	//Environment variables are usually set at the top of this file.
108	var ICONPATH = '/pdb/skins/pastel/images/tree/';
109	USETEXTLINKS = 1;
110	STARTALLOPEN = 0;
111	USEFRAMES = 0;
112	USEICONS = 1;
113	WRAPTEXT = 0;
114	PRESERVESTATE = 1;
115	HIGHLIGHT=1;
116	ALLOWTOPLEVELRETRACTION = 1;
117
118
119
120
121	var pdbPathNames = new Object(); // associative array of links to xIDs of tree
122
123	function myInsDoc(nn,folder,opt,link,iconsrc)
124	{
125	//if (opt == 'S')
126	{
127	if (link.substring(0,5) == '/pdb/')
128	{
129	pdbPathNames[link] = nn;
130	}
131	}
132	var myInsDocSub = insDoc(folder,gLnk(opt, nn, link.replace(/'/g, "\\'")));
133	myInsDocSub.xID = nn;
134	if (iconsrc)
135	{
136	myInsDocSub.iconSrc = iconsrc;
137	}
138	else
139	{
140	myInsDocSub.iconSrc = ICONPATH + 'ftvsquare.gif';
141	}
142	return myInsDocSub;
143	}
144
145	function myInsFolder(nn,folder,link)
146	{
147	if (link.substring(0,5) == '/pdb/')
148	{
149	pdbPathNames[link] = nn;
150	}
151	var myInsFldSub = insFld(folder,gFld(nn, link.replace(/'/g, "\\'")));
152	myInsFldSub.xID = nn.replace(/amp;/g, '');
153	return myInsFldSub;
154	}
155
156	function checkLocation()
157	{
158	var pn = window.location.pathname + window.location.search;
159	for (prop in pdbPathNames)
160	{
161	if (pn.indexOf(prop) >= 0)
162	{
163	var docObj;
164	docObj = findObj(pdbPathNames[prop]);
165	docObj.forceOpeningOfAncestorFolders();
166	highlightObjLink(docObj);
167	break;
168	}
169	}
170	}
171
172
173
174	function addHomeTree()
175	{
176
177	}
178
179	function addSearchTree()
180	{
181
182	}
183
184
185
186	function addExploreTree()
187	{
188
189	fSub = myInsDoc('<b>1CY0<\/b>',f,'S','/pdb/explore.do?structureId=1CY0');
190
191	fSub = myInsFolder('Download Files',f,'');
192	fSubSub = myInsDoc('PDB File',fSub,'S','/pdb/download/downloadFile.do?fileFormat=pdb&compression=NO&structureId=1CY0');
193	fSubSub = myInsDoc('PDB gz',fSub,'S','/pdb/files/1cy0.pdb.gz');
194	fSubSub = myInsDoc('PDB File (Header)',fSub,'S','/pdb/download/downloadFile.do?fileFormat=pdb&headerOnly=YES&structureId=1CY0');
195	fSubSub = myInsDoc('mmCIF File',fSub,'S','/pdb/download/downloadFile.do?fileFormat=cif&compression=NO&structureId=1CY0');
196	fSubSub = myInsDoc('mmCIF gz',fSub,'S','/pdb/files/1cy0.cif.gz');
197	fSubSub = myInsDoc('mmCIF File (Header)',fSub,'S','/pdb/download/downloadFile.do?fileFormat=cif&headerOnly=YES&structureId=1CY0');
198	fSubSub = myInsDoc('PDBML/XML File',fSub,'S','/pdb/download/downloadFile.do?fileFormat=xml&compression=NO&structureId=1CY0');
199	fSubSub = myInsDoc('PDBML/XML gz',fSub,'S','/pdb/files/1cy0.xml.gz');
200	fSubSub = myInsDoc('PDBML/XML File (Header)',fSub,'S','/pdb/download/downloadFile.do?fileFormat=xml&headerOnly=YES&structureId=1CY0');
201
202
203	fSubSub = myInsDoc('Biological Unit Coordinates',fSub,'S','/pdb/files/1cy0.pdb1.gz');
204
205	fSub = myInsDoc('FASTA Sequence',f,'S','/pdb/download/downloadFile.do?fileFormat=FASTA&compression=NO&structureId=1CY0');
206
207	fSub = myInsFolder('Display Files',f,'');
208
209	fSubSub = myInsDoc('Custom Structure Summary',fSub,'S','/pdb/explore/customStructureReportForm.do?exptype=misc');
210
211	fSubSub = myInsDoc('PDB File',fSub,'B','/pdb/files/1cy0.pdb');
212	fSubSub = myInsDoc('PDB File (Header)',fSub,'B','/pdb/files/1cy0.pdb?headerOnly=YES');
213	fSubSub = myInsDoc('mmCIF File',fSub,'B','/pdb/files/1cy0.cif');
214	fSubSub = myInsDoc('mmCIF File (Header)',fSub,'B','/pdb/files/1cy0.cif?headerOnly=YES');
215	fSubSub = myInsDoc('PDBML/XML File',fSub,'B','/pdb/files/1cy0.xml');
216	fSubSub = myInsDoc('PDBML/XML (Header)',fSub,'B','/pdb/files/1cy0.xml?headerOnly=YES');
217
218	fSub = myInsFolder('Display Molecule',f,'');
219	fSubSub = myInsDoc('Image Gallery',fSub,'S','/pdb/explore/images.do?structureId=1CY0');
220	fSubSub = myInsDoc('KiNG Viewer',fSub,'S','/pdb/static.do?p=explorer/viewers/king.jsp');
221	fSubSub = myInsDoc('Jmol Viewer',fSub,'S','/pdb/static.do?p=explorer/viewers/jmol.jsp');
222	fSubSub = myInsDoc('WebMol Viewer',fSub,'S','/pdb/static.do?p=explorer/viewers/webmol.jsp');
223	fSubSub = myInsDoc('Protein Workshop',fSub,'S','/pdb/Viewers/ProteinWorkshop/protein_workshop_launch.jsp');
224	fSubSub = myInsDoc('Rasmol Viewer <br>(<b>Plugin required</b>)',fSub,'B','/pdb/download/downloadFile.do?fileFormat=PDB&display=rasmol&compression=NO&structureId=1CY0');
225	fSubSub = myInsDoc('Swiss-PDB Viewer <br>(<b>Plugin required</b>)',fSub,'B','/pdb/download/downloadFile.do?fileFormat=PDB&display=spdbv&compression=NO&structureId=1CY0');
226	fSubSub = myInsDoc('KiNG Help',fSub,'S','javascript:callHelp(roboLoc,\'viewers/king.htm\');',ICONPATH + 'question.gif');
227	fSubSub = myInsDoc('Jmol Help',fSub,'S','javascript:callHelp(roboLoc,\'viewers/jmol.htm\');',ICONPATH + 'question.gif');
228	fSubSub = myInsDoc('WebMol Help',fSub,'S','javascript:callHelp(roboLoc,\'viewers/webmol.htm\');',ICONPATH + 'question.gif');
229	fSubSub = myInsDoc('Protein Workshop Help',fSub,'S','javascript:callHelp(roboLoc,\'viewers/proteinworkshop.htm\');',ICONPATH + 'question.gif');
230	fSubSub = myInsDoc('QuickPDB',fSub,'S','javascript:callHelp(roboLoc,\'viewers/thequickpdb.htm\');',ICONPATH + 'question.gif');
231
232
233	fSubSub = myInsDoc('Asymmetric Unit /<br> Biological Molecule',fSub,'S','/pdb/static.do?p=explorer/singleimage.jsp&structureId=1cy0&type=asym&size=500');
234
235	fSub = myInsDoc('<b>Structural Reports</b> ',f,'S','/pdb/explore/biologyAndChemistry.do');
236	fSub = myInsDoc('<b>External Links</b> ',f,'S','/pdb/explore/externalReferences.do');
237
238	fSub = myInsFolder('Structure Analysis ',f,'');
239	fSubSub = myInsFolder('Geometry ',fSub,'');
240
241
242	fSubSubSub = myInsDoc('RCSB Graphics',fSubSub,'S','/pdb/explore/geometryGraph.do?structureId=1CY0');
243	fSubSubSub = myInsDoc('RCSB Tables',fSubSub,'S','/pdb/explore/geometryDisplay.do');
244
245	fSubSubSub = myInsDoc('MolProbity Ramachandran Plot',fSubSub,'B','/pdb/images/1CY0_ram_m_500.pdf');
246
247
248	fSubSub = myInsFolder('Sequence Variants ',fSub,'');
249
250	fSubSubSub = myInsDoc('TOP1_ECOLI Variants',fSubSub,'S','/pdb/search/smartSubquery.do?structureId=1CY0&variant=1&smartSearchSubtype=StructureVariantQuery&spId=TOP1_ECOLI');
251
252	fSubSubSub = myInsDoc('TOP1_ECOLI Non-Variants',fSubSub,'S','/pdb/search/smartSubquery.do?structureId=1CY0&variant=0&smartSearchSubtype=StructureVariantQuery&spId=TOP1_ECOLI');
253
254	fSub = myInsFolder('Help ',f,'');
255	fSubSub = myInsDoc('Structure Explorer Intro',fSub,'S','javascript:callHelp(roboLoc,\'structure_explorer/introduction_to_structure_explorer.htm\');',ICONPATH + 'question.gif');
256	fSubSub = myInsDoc('Molecular Viewers',fSub,'S','javascript:callHelp(roboLoc,\'molecular_viewers/introduction_to_molecular_viewers.htm\');',ICONPATH + 'question.gif');
257	fSubSub = myInsDoc('Structure Summary',fSub,'S','javascript:callHelp(roboLoc,\'structure_explorer/summary_information.htm\');',ICONPATH + 'question.gif');
258	fSubSub = myInsDoc('Biological Molecule',fSub,'S','javascript:callHelp(roboLoc,\'data_download/biological_unit/biological_unit_introduction.htm\');',ICONPATH + 'question.gif');
259	fSubSub = myInsDoc('Biology & Chemistry',fSub,'S','javascript:callHelp(roboLoc,\'quick_links/quick_links_biology_and_chemistry.htm\');',ICONPATH + 'question.gif');
260	fSubSub = myInsDoc('Sequence Details',fSub,'S','javascript:callHelp(roboLoc,\'quick_links/quick_links_sequence_details.htm\');',ICONPATH + 'question.gif');
261	fSubSub = myInsDoc('Structural Features',fSub,'S','javascript:callHelp(roboLoc,\'quick_links/quick_links.structural_features.htm\');',ICONPATH + 'question.gif');
262	fSubSub = myInsDoc('Materials & Methods (X-Ray)',fSub,'S','javascript:callHelp(roboLoc,\'quick_links/materials_and_methods/x-ray_materials_and_methods.htm\');',ICONPATH + 'question.gif');
263	fSubSub = myInsDoc('Materials & Methods (NMR)',fSub,'S','javascript:callHelp(roboLoc,\'quick_links/materials_and_methods/nmr_materials_and_methods.htm\');',ICONPATH + 'question.gif');
264
265
266	}
267
268	function addReportTree()
269	{
270
271	fSub = myInsDoc('<b>Show Query Details<\/b>',f,'S','/pdb/static.do?p=results/queryDesc.jsp');
272	fSub = myInsDoc('Results Help',f,'S','javascript:callHelp(\'/robohelp/\',\'query_results_browser/introduction_to_results_browser.htm\');',ICONPATH + 'question.gif');
273
274	}
275
276	function addQueriesTree()
277	{
278	fSub = myInsDoc('Clear queries',f,'S','/pdb/queries/clearqueries.do');
279	}
280
281	</script>
282
283	<script type="text/javascript" language="JavaScript">
284	var roboLoc = "/robohelp/";
285	</script>
286	</head>
287
288	<body bgcolor="#ffffff" style="margin:10px 10px 10px 10px;" onload="liveSearchInit();pdbBodyLoadInit();">
289
290
291	<!-- Universal retriever iFrame - for debugging it's a good idea to make the height 60 or so and frameborder set to one -->
292	<iframe src="/pdb/browse/menu_empty.html" name="retriever" id="retriever" width="100%" height="1" frameborder="0">
293	<!-- This Page requires a modern browser supporting IFRAMES or ILAYERS --><p> </p>
294	</iframe>
295
296	<!-- MAIN TABLE -->
297	<table border="0" cellpadding="0" cellspacing="0" align="center" ><!-- for debugging use border -->
298	<tbody>
299
300	<tr>
301	<td colspan="3">
302
303
304
305
306
307
308	<script language="Javascript" type="text/javascript">
309	function checkSequenceLength()
310	{
311	if ((document.headerQueryForm.inputQuickSearch.value.substr(0,9) == 'sequence:')&&(document.headerQueryForm.inputQuickSearch.value.length < 15))
312	{
313	alert('Sequence searches must be at least 6 characters long');
314	return false;
315	}
316	else
317	return liveSearchSubmit();
318
319	}
320
321	</script>
322	<form action="/pdb/search/navbarsearch.do" onSubmit="return checkSequenceLength();" method="get" name="headerQueryForm">
323	<table border="0" cellpadding="0" cellspacing="0" width="100%">
324	<tr>
325	<td width="210"><a href="/pdb"><img alt="RCSB PDB Protein Data Bank \| Home" title="RCSB PDB Protein Data Bank \| Home" src="/pdb/skins/pastel/images/header/pdblogo.gif" width="198" border="0"></a></td>
326	<td align="right" class="headertop" colspan="2">
327	<a href="http://www.wwpdb.org/" target="_blank"><img alt="A Member of the wwPDB" title="A Member of the wwPDB" src="/pdb/skins/pastel/images/header/wwpdb.gif" width="191" height="15" border="0"></a><br/>
328	An Information Portal to Biological Macromolecular Structures
329	<br/>
330	<span class="body">
331	As of <a href="/pdb/search/smartSubquery.do?smartSearchSubtype=LastLoadQuery">Tuesday Dec 26, 2006</a> <a href="/pdb/rss/LastLoad" title="RSS Feed for the Latest Released Structures"><img alt="RSS Feed for the Latest Released Structures" border="0" src="/pdbstatic/images/feed-icon16x16.png"></a>
332	there are 40870 Structures
333	<a href="javascript:callHelp(roboLoc, 'search_database/latest_release/introduction_to_latest_release.htm');"><img alt="  ? " title="  ? " src="/pdb/skins/pastel/images/tree/question.gif" border="0" style="vertical-align:middle;"></a>
334	\|
335	<a href="/pdb/static.do?p=general_information/pdb_statistics/index.html&amp">PDB Statistics</a><a href="javascript:callHelp(roboLoc, 'web_site/pdb_statistics.htm');"><img alt="  ? " title="  ? " src="/pdb/skins/pastel/images/tree/question.gif" border="0" style="vertical-align:middle;"></a>
336	</span>
337	</td>
338	</tr>
339
340	<tr>
341	<td style="vertical-align:top;padding-top:0.2em;">
342	<a href="/pdb/static.do?p=general_information/about_pdb/contact/index.html" class="tabblutxt">Contact Us</a> \|
343	<a href="javascript:callHelp(roboLoc,'site_navigation/introduction_to_site_navigation.htm');" class="tabblutxt">Help</a> \|
344	<a href="javascript:printPage('http://www.rcsb.org/pdb/explore/explore.do?structureId=1CY0');" class="tabblutxt">Print Page</a>
345	</td>
346	<td style="background-image:url('/pdb/skins/pastel/images/header/header_bg2.jpg');background-repeat: repeat-x;vertical-align:top;background-position: 0% 100%;" width="37" rowspan="2"><img src="/pdbstatic/images/spacer.gif" alt="" width="37" height="35" border="0"></td>
347
348
349	<td nowrap style="background-image:url('/pdb/skins/pastel/images/header/header_bg3.jpg');background-repeat: repeat-x;background-color:#3333FF;background-position: 0% 100%;padding-right:2px;" class="topnavlinks" rowspan="2">
350
351	<table>
352	<tr>
353	<td nowrap class="topnavlinks">
354	<input type="hidden" name="newSearch" value="yes">
355	<input type="hidden" name="isAuthorSearch" value="no" >
356	<input type="radio" name="radioset" value="All" checked class="radio" onclick="javascript:document.headerQueryForm.isAuthorSearch.value='no';">PDB ID or keyword
357	<input type="radio" name="radioset" value="Authors" class="radio" onclick="javascript:if(this.checked){document.headerQueryForm.isAuthorSearch.value='yes';}">Author
358	</td>
359	<td class="topnavlinks" nowrap>
360	<input type="text" class="input" size="10" name="inputQuickSearch" id="livesearch" onkeypress="liveSearchStart()" onblur="setTimeout('closeResults()',10000);" >
361	<div id="LSResult" style="display: none;"><div id="LSShadow"></div></div>
362	</td>
363	<td class="topnavlinks" nowrap>
364	<input type="image" src="/pdb/skins/pastel/images/header/header_search.gif" size="61" value="Search" class="text" align="middle" name="image" alt="Search" title="Search">
365	<a href="javascript:callHelp(roboLoc, 'search_database/top_bar_search/top_bar_search.htm');"><img alt="  ? " title="  ? " src="/pdb/skins/pastel/images/header/mainquestion.gif" border="0" style="vertical-align:middle;"></a>
366	\| <a href="/pdb/search/advSearch.do" class="textwhite">Advanced Search</a>
367	</td>
368	</tr>
369	</table>
370
371	</td>
372	</tr>
373
374	<tr>
375	<td style="background-image:url('/pdb/skins/pastel/images/header/header_bg1.jpg');text-align:left;background-repeat: repeat-x;vertical-align:top;background-position: 0% 100%;"><img src="/pdbstatic/images/spacer.gif" alt="" width="37" height="13" border="0"></td>
376	</tr>
377	</table>
378	</form>
379
380
381
382
383
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385
386
387	</td>
388	</tr>
389
390	<tr valign="top">
391	<td class="navbackground" style="width:230px;">
392
393
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395
396
397
398
399
400
401	<table border="0" cellpadding="0" cellspacing="0">
402	<tr>
403	<td class="navbackground">
404	<div id="hdrtab">
405	<ul>
406	<li><a href="/pdb/Welcome.do">Home</a></li>
407	<li><a href="/pdb/static.do?p=search/index.html">Search</a></li>
408
409	<li id="current"><a>Structure</a></li>
410
411	</ul>
412	</div>
413	</td>
414	</tr>
415	<tr>
416	<td class="navbackground">
417	<a style="font-size:1pt;text-decoration:none;color:#FFFF99" href="http://www.treemenu.net/" target=_blank></a>
418	<span class="TreeviewSpanArea">
419	<script type="text/javascript" language="JavaScript">
420	foldersTree = gFld('', '');
421	foldersTree.treeID = 'ExploreRoot';
422	foldersTree.xID = foldersTree.treeID;
423	f = foldersTree;
424	addExploreTree();
425	initializeDocument();
426	checkLocation();
427	</script>
428
429	</span>
430	</td>
431	</tr>
432	<tr>
433	<td class="homewhite" height="1"><img src="/pdbstatic/images/spacer.gif" alt="" width="1" height="1" border="0"></td>
434	</tr>
435	</table>
436
437
438
439
440
441	</td>
442
443	<td valign="top" style="vertical-align:top;"> <!-- BEGIN MAIN RIGHT -->
444	<table border="0" cellpadding="0" cellspacing="0">
445	<tr>
446	<td valign="top" class="maintd">
447	<noscript><div style="padding-left:8px;font-weight:bold;color:#FF0000;font-size:16px">This browser is either not Javascript enabled or has it turned off.<br />This site will not function correctly without Javascript.</div></noscript>
448
449
450
451
452
453
454
455
456
457	<div id="hdrtab">
458	<ul>
459
460	<li><a href="/pdb/explore.do?structureId=1CY0">Structure Summary</a></li>
461
462	<li><a href="/pdb/explore/biologyAndChemistry.do?structureId=1CY0">Biology & Chemistry</a></li>
463
464	<li><a href="/pdb/explore/materialsAndMethods.do?structureId=1CY0">Materials & Methods</a></li>
465
466	<li><a href="/pdb/explore/sequence.do?structureId=1CY0">Sequence Details</a></li>
467
468	<li><a href="/pdb/explore/geometryDisplay.do?structureId=1CY0">Geometry</a></li>
469
470	</ul>
471	</div>
472	</td>
473	</tr>
474
475	<tr>
476	<td>
477	<font color="RED"><b>LIMITED FUNCTIONALITY BROWSER</b></font>
478	<br />
479	<span class="static_header">
480	You are currently using a browser that is not fully compatible with this website.<br />
481	If you would like to have full functionality, please upgrade your browser. <br />
482
483
484	<a href="/pdb/static.do?p=home/faq.html#goodBrowsers">List of Supported & Unsupported Browsers for the RCSB Protein Data Bank Web Site</a> <br />
485
486	<br />
487	</span>
488	</td>
489	</tr>
490
491	<tr>
492	<td valign="top" class="maintd" style="padding-left:10px;">
493
494
495
496
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500
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533
534
535	<!---->
536
537
538
539
540
541	<script type="text/javascript" language="JavaScript">
542
543	function searchCitationAuthor(author, primary)
544	{
545	document.queryCitationAuthorForm.elements['citation_author.name.value'].value = author;
546	document.queryCitationAuthorForm.elements['citation_author.name.comparator'].value = "equals";
547	if (primary)
548	document.queryCitationAuthorForm.elements['citation_author.citation_id.value'].value="primary";
549	document.queryCitationAuthorForm.submit();
550	}
551
552	function searchStructureAuthor(author)
553	{
554	document.queryStructureAuthorForm.elements['authName'].value = author;
555	document.queryStructureAuthorForm.submit();
556	}
557
558	function searchPdbxKeyword(keyword)
559	{
560	document.queryKeywordsForm.elements['struct_keywords.pdbx_keywords.value'].value = keyword;
561	document.queryKeywordsForm.submit();
562	}
563
564	function searchLigand(id)
565	{
566	document.ligandQueryForm.elements['chem_comp.id.value'].value = id;
567	document.ligandQueryForm.elements['chem_comp.id.comparator'].value = "=";
568	document.ligandQueryForm.submit();
569	}
570	function searchEc(ec)
571	{
572	document.ecQueryForm.elements['entity.pdbx_ec.value'].value = ec;
573	document.ecQueryForm.elements['entity.pdbx_ec.comparator'].value = "=";
574	document.ecQueryForm.submit();
575	}
576	function searchSpaceGroup(sg)
577	{
578	document.sgQueryForm.elements['symmetry.space_group_name_H-M.value'].value = sg;
579	document.sgQueryForm.elements['symmetry.space_group_name_H-M.comparator'].value = "=";
580	document.sgQueryForm.submit();
581	}
582
583	function searchSource(natSci, natCommon, genSci, genCommon)
584	{
585	document.srcQueryForm.elements['entity_src_nat.pdbx_organism_scientific.value'].value = natSci;
586	document.srcQueryForm.elements['entity_src_nat.common_name.value'].value = natCommon;
587	document.srcQueryForm.elements['entity_src_gen.pdbx_gene_src_scientific_name.value'].value = genSci;
588	document.srcQueryForm.elements['entity_src_gen.gene_src_common_name.value'].value = genCommon;
589	document.srcQueryForm.submit();
590	}
591
592	</script>
593
594
595
596
597	<script type="text/javascript" language="JavaScript">
598
599	function queryByExample(s, t)
600	{
601	}
602	function FW_startTimeout()
603	{
604	}
605	function removeHighlight()
606	{
607	}
608
609	</script>
610
611	<table cellpadding="2" cellspacing="2" border="0" style="text-align: left; width: 100%;">
612	<tbody>
613	<tr>
614	<td style="vertical-align: top;">
615	<table cellpadding="5" cellspacing="2" border="0" style="text-align: left; width: 100%;">
616	<tbody>
617	<tr>
618	<td>
619	<!--div id="hdrtab">
620	<ul>
621	<li id="current"><a href="#">Structure Summary</a></li>
622	<li><a href="/pdb/explore/biologyAndChemistry.do">Biology & Chemistry</a></li>
623	<li><a href="/pdb/explore/materialsAndMethods.do">Materials & Methods</a></li>
624	<li><a href="/pdb/explore/sequence.do">Sequence Details</a></li>
625	<li><a href="/pdb/explore/geometryDisplay.do">Geometry</a></li>
626	</ul>
627	</div-->
628	</td>
629	<td style="text-align: right;">
630
631
632
633
634	<span class="se_pagetitle">1CY0 </span>
635	<a href="/pdb/files/1cy0.pdb" title="Display PDB file" target="_blank"><img src="/pdbstatic/images/summary.jpg" alt="Display PDB file" border='0'></a>
636
637	</td>
638	</tr>
639	</tbody>
640	</table>
641	<table cellpadding="5" cellspacing="5" border="0" style="text-align: left; width: 100%;">
642	<tbody>
643	<tr class="se_back1">
644	<td width="15%" align="right" valign="top" class="se_item">
645	Title
646	</td>
647	<td width="85%" valign="top" class="se_datalarge1">
648
649	COMPLEX OF E.COLI DNA TOPOISOMERASE I WITH 3'-5'-ADENOSINE DIPHOSPHATE
650
651	<img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="StructureTitle">
652	</td>
653	</tr>
654	<tr class="se_back2">
655	<td width="15%" align="right" class="se_item">
656	Authors
657	</td>
658	<td width="85%" >
659	<form action="/pdb/search/smartSubquery.do" method="get" name="queryStructureAuthorForm">
660	<input type="hidden" name="authName" value="">
661	<input type="hidden" name="smartSearchSubtype" value="AuthorQuery">
662	<input type="hidden" name="display" value="true">
663	<a class="seAuthors" onmouseover="this.className='seAuthorsHover';" onmouseout="this.className='seAuthors';" onclick="searchStructureAuthor('Feinberg, H.');">Feinberg, H.</a>,  <a class="seAuthors" onmouseover="this.className='seAuthorsHover';" onmouseout="this.className='seAuthors';" onclick="searchStructureAuthor('Changela, A.');">Changela, A.</a>,  <a class="seAuthors" onmouseover="this.className='seAuthorsHover';" onmouseout="this.className='seAuthors';" onclick="searchStructureAuthor('Mondragon, A.');">Mondragon, A.</a>
664	<img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="StructureExperimentAuthors">
665	</form>
666	</td>
667	</tr>
668	<tr class="se_back1">
669	<td width="15%" align="right" class="se_item">
670	<form action="/pdb/search/smartSubquery.do" method="get" name="queryCitationAuthorForm">
671	<input type="hidden" name="citation_author.name.value" value="">
672	<input type="hidden" name="citation_author.name.comparator" value="contains">
673	<input type="hidden" name="citation_author.citation_id.value" value="">
674	<input type="hidden" name="smartSearchSubtype" value="CitationAuthorQuery">
675	<input type="hidden" name="display" value="true">
676	</form>
677	Primary Citation
678	</td>
679	<td width="85%" class="se_datasmall1">
680	<a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchCitationAuthor('Feinberg, H.', true);">Feinberg, H.</a>,  <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchCitationAuthor('Changela, A.', true);">Changela, A.</a>,  <a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchCitationAuthor('Mondragon, A.', true);">Mondragon, A.</a>
681	<img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="CitationArticleAuthors">
682
683	Protein-nucleotide interactions in E. coli DNA topoisomerase I.
684
685	<img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="CitationArticleTitle">
686
687	<span class="se_journal">Nat.Struct.Biol.</span>
688
689
690	<img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="CitationJournalName">
691
692	<span class="se_journal">v6</span>
693
694	<img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="CitationJournalVolume">
695
696	<span class="se_journal">pp.961-968</span>
697
698	,
699	<span class="se_journal">1999</span>
700
701
702	<img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="CitationJournalYear">
703
704
705	<br>
706	[ <a class="se_datalarge" href="/pdb/explore/pubmed.do?structureId=1CY0" name="Abstract" ALT="View Searchable PubMed Abstract" TITLE="View Searchable PubMed Abstract">Abstract</a> ]
707	<a class="se_datalarge" href="http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&dopt=Abstract&list_uids=10504732" target="resource_window">
708	<img src="/pdbstatic/explorer/images/abstract_icon.gif" BORDER="0" ALT="View PubMed Abstract at NCBI" TITLE="View PubMed Abstract at NCBI">
709
710	</td>
711	</tr>
712	<tr class="se_back2">
713	<td width="15%" align="right" class="se_item">
714	History
715	</td>
716	<td width="85%" class="se_datalarge2">
717	<span class="se_subitem">Deposition  </span>
718	1999-08-31
719	<img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="DepositionDate">
720
721	<span class="se_subitem"> Release </span>
722	2000-03-08
723	<img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="ReleaseDate">
724
725	</td>
726	</tr>
727	<tr class="se_back1">
728	<td width="15%" align="right" class="se_item">
729	Experimental Method
730	</td>
731	<td width="85%" class="se_datalarge1">
732	<span class="se_subitem">Type  </span>
733	X-RAY DIFFRACTION
734	<img src="/pdbstatic/explorer/images/spacer.gif" alt="">
735	<span class="se_subitem">Data</span>
736
737
738	<a class="se_datasmall1">N/A</a>
739
740
741
742	</td></tr>
743
744
745	<tr class="se_back2">
746	<td width="15%" align="right" class="se_item">
747	Parameters
748	</td>
749	<td width="85%" class="se_datalarge2">
750
751	<form action="/pdb/search/smartSubquery.do" method="get" name="sgQueryForm">
752	<input type="hidden" name="smartSearchSubtype" value="SpaceGroupQuery">
753	<input type="hidden" name="display" value="true">
754	<input type="hidden" name="symmetry.space_group_name_H-M.value" value="">
755	<input type="hidden" name="symmetry.space_group_name_H-M.comparator" value="=">
756
757	<table border="0" cellpadding="1" cellspacing="1" width="100%">
758	<tr class="se_subitem2">
759	<td width="20%">
760	Resolution[Å]
761	<a href='/pdb/statistics/histogram.do?mdcat=refine&mditem=ls_d_res_high&minLabel=0&maxLabel=5&numOfbars=10'>
762	<img src='/pdbstatic/images/histogram16x16.jpg' border=0 title='View a histogram of Resolution' alt='View a histogram of Resolution'>
763	</a>
764	</td>
765	<td width="20%">
766	R-Value
767	</td>
768	<td width="20%">
769	R-Free
770	<td width="25%">
771	Space Group
772	</td>
773	</tr>
774	<tr class="se_subitem2">
775	<td width="20%" class="se_datalarge2">
776	2.45
777	<img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="Resolution">
778	</td>
779	<td width="20%" align="left" class="se_datalarge2">
780	0.220
781	(obs.)
782	</td>
783	<td width="20%" align="left" class="se_datalarge2">
784	0.274
785
786	</td>
787	<td width="25%" class="se_datalarge2">
788
789	<a class="se_datasmall" onclick="searchSpaceGroup('P 21 21 21');" onmouseover="this.className='se_datasmallHover'" onmouseout="this.className='se_datasmall'">
790	P 2<sub>1</sub> 2<sub>1</sub> 2<sub>1</sub>
791	</a>
792
793	<img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="SpaceGroup">
794	</td>
795	</tr>
796	</table>
797	</form>
798	</td>
799	</tr>
800	<tr class="se_back1">
801	<td width="15%" align="right" class="se_item">
802	Unit Cell
803	</td>
804	<td width="85%" class="se_datalarge1" valign="top">
805	<table border="0" cellpadding="1" cellspacing="1" width="100%">
806	<tr class="se_subitem1">
807	<td width="20%">
808	<span class="se_unitcellitem">Length [Å]</span>
809	</td>
810	<td width="13%">
811	a
812	</td>
813	<td width="13%" >
814
815	<span class="se_datasmall1">63.04</span>
816
817	</td>
818	<td width="13%" >
819	b
820	</td>
821	<td width="13%">
822
823	<span class="se_datasmall1">73.31</span>
824
825	</td>
826	<td width="13%" >
827	c
828	</td>
829	<td width="15%" >
830
831	<span class="se_datasmall1">134.46</span>
832
833	</td>
834	</tr>
835	<tr class="se_subitem1">
836	<td width="20%">
837	<span class="se_unitcellitem">Angles [°]</span>
838	</td>
839	<td width="13%" >
840	alpha
841	</td>
842	<td width="13%" >
843
844	<span class="se_datasmall1">90.00</span>
845
846	</td>
847	<td width="13%">
848	beta
849	</td>
850	<td width="13%" >
851
852	<span class="se_datasmall1">90.00</span>
853
854	</td>
855	<td width="13%" >
856	gamma
857	</td>
858	<td width="15%" >
859
860	<span class="se_datasmall1">90.00</span>
861
862	</td>
863	</tr>
864	</table>
865	</td>
866	</tr>
867
868
869	<tr class="se_back2">
870	<td width="15%" align="right" valign="top" class="se_item">
871	Molecular Description Asymmetric Unit
872	</td>
873	<td width="85%" class="se_datalarge2" valign="top">
874
875	<form action="/pdb/search/smartSubquery.do" method="get" name="ecQueryForm">
876	<input type="hidden" name="smartSearchSubtype" value="EnzymeClassificationQuery">
877	<input type="hidden" name="display" value="true">
878	<input type="hidden" name="entity.pdbx_ec.value" value="">
879	<input type="hidden" name="entity.pdbx_ec.comparator" value="=">
880
881	<!-- %=org.pdb.util.middle.MoleculeDescription.getDescription(myStructureId)%><br-->
882
883
884	<span class="se_subitem"><br>Polymer:</span> 1
885	<span class="se_subitem">Molecule:</span> DNA TOPOISOMERASE I
886	<span class="se_subitem">Fragment:</span> 67 KDA N-TERMINAL FRAGMENT OF E.COLI TOPOISOMERASE I
887	<span class="se_subitem">Chains:</span> A
888	<span class="se_subitem">EC no.:</span> <a class="se_datasmall" onclick="searchEc('5.99.1.2');" onmouseover="this.className='se_datasmallHover'" onmouseout="this.className='se_datasmall'">5.99.1.2</a> <a class="se_datalarge" href="http://www.chem.qmul.ac.uk/iubmb/enzyme/EC5/99/1/2.html" target="resource_window"><img src="/pdbstatic/explorer/images/iubmb_icon.gif" BORDER="0" ALT="Go to IUBMB EC entry" TITLE="Go to IUBMB EC entry"></a>
889
890	</form>
891
892
893	<form action="/pdb/search/smartSubquery.do" method="get" name="queryKeywordsForm">
894	<input type="hidden" name="smartSearchSubtype" value="StructureKeywordsQuery">
895	<input type="hidden" name="display" value="true">
896	<input type="hidden" name="struct_keywords.pdbx_keywords.value" value="">
897	<input type="hidden" name="struct_keywords.pdbx_keywords.comparator" value="startswith">
898	</form>
899
900
901	<img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="Compound">
902	</td>
903	</tr>
904	<tr class="se_back1">
905	<td width="15%" align="right" valign="top" class="se_item">
906	Classification
907	</td>
908	<td width="40%" class="se_datalarge1">
909
910	<span class="qrb_value">
911	<a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchPdbxKeyword('ISOMERASE');">
912	Isomerase
913	</a>
914	</span>
915
916	<img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="StructureSummary">
917
918	</td>
919	</tr>
920	</tbody>
921	</table>
922	</td>
923	<td style="vertical-align: top; text-align: right; width: 250px;">
924
925
926
927
928
929
930
931
932
933
934
935	<script type="text/javascript" language="JavaScript">
936
937	var isImage = "bio";
938	function switchStructureImage()
939	{
940	if (isImage == "bio") {
941	document.switchImageForm.structureImageButton.value = "Asymmetric Unit";
942	document.switchImageForm.structureImage.src = '/pdb/images/1cy0_asym_r_250.jpg';
943	isImage = "asym";
944	}
945	else {
946	document.switchImageForm.structureImageButton.value = "Biological Molecule";
947	//structureImageText.innerText = "Biological Molecule";
948	document.switchImageForm.structureImage.src = '/pdb/images/1cy0_bio_r_250.jpg';
949	isImage = "bio";
950	}
951	}
952	</script>
953
954
955
956	<form name="switchImageForm" action="">
957
958
959	<table border="0" cellpadding="0" cellspacing="0" width="256">
960	<tr class="homedark">
961	<td class="putih4"> Images and Visualization</td>
962	<td align="right" valign="top"><img
963	src="/pdbstatic/home/tablecorner.gif" alt="" border="0"></td>
964	</tr>
965	<tr>
966	<td colspan="2">
967	<table border="0" cellpadding="1" cellspacing="0" width="100%"
968	class="homedark">
969	<tr>
970	<td>
971	<table border="0" cellpadding="1" cellspacing="0" width="100%"
972	class="homewhite">
973
974
975
976
977	<!--table border="0" width="250" align="right" bgcolor="#9999cc"-->
978
979	<tr>
980	<td align="center"><font size="2" face="Arial, Arial, Helvetica">Biological
981	Molecule / Asymmetric Unit</font></td>
982	</tr>
983	<tr>
984	<td align="center"><img id="structureImage" name="structureImage"
985	src="/pdb/images/1cy0_asym_r_250.jpg" border="0"
986	alt="Biological Molecule / Asymmetric Unit Image for 1CY0">
987	</td>
988	</tr>
989
990	<tr>
991	<td align="center" class="it_item">
992	<table>
993	<tr>
994	<td class="it_item" colspan="4" align="center">Display Options</td>
995	</tr>
996	<tr>
997	<td align="center"><a class="imagetable"
998	href="/pdb/static.do?p=explorer/viewers/king.jsp"
999	title="KiNG requires Java">KiNG</a></td>
1000	</tr>
1001	<tr>
1002	<td align="center"><a class="imagetable"
1003	href="/pdb/static.do?p=explorer/viewers/jmol.jsp"
1004	title="Jmol requires Java">Jmol</a></td>
1005	</tr>
1006	<tr>
1007	<td align="center"><a class="imagetable"
1008	href="/pdb/static.do?p=explorer/viewers/webmol.jsp"
1009	title="WebMol requires Java">WebMol</a></td>
1010	</tr>
1011	<tr>
1012	<td align="center"><a class="imagetable"
1013	href="/pdb/Viewers/ProteinWorkshop/protein_workshop_launch.jsp"
1014	title="ProteinWorkshop requires Java">Protein Workshop</a></td>
1015	</tr>
1016	<tr><td align="center"><a class="imagetable" href="/pdb/static.do?p=Viewers/QuickPDB/quickPDBApplet.jsp" title="QuickPDB requires Java">QuickPDB</a></td></tr>
1017	<tr>
1018	<td align="center"><a class="imagetable"
1019	href="/pdb/explore/images.do?structureId=1CY0">All
1020	Images</a></td>
1021	</tr>
1022
1023
1024	<!--
1025	<tr>
1026	<td class="it_item">Web Start  </td>
1027	<td><a class="imagetable" href="/pdb/Viewers/king.jsp" title="King requires Java">KiNG</a></td>
1028	<td><a class="imagetable" href="/pdb/Viewers/jmol.jsp" title="Jmol requires Java">Jmol</a></td>
1029	<td><a class="imagetable" href="/pdb/Viewers/webmol.jsp" title="WebMol requires Java">WebMol</a></td>
1030	</tr>
1031	-->
1032	</table>
1033	</td>
1034	</tr>
1035
1036
1037	</table>
1038	</td>
1039
1040	</tr>
1041	</table>
1042	</td>
1043	</tr>
1044	</table>
1045
1046	</form>
1047
1048	</td>
1049	</tr>
1050	</tbody>
1051	</table>
1052
1053
1054	<table border="0" cellpadding="4" cellspacing="4" width="100%">
1055	<tr class="se_back2">
1056	<td width="15%" align="right" valign="top" class="se_item">
1057	Source
1058	<form action="/pdb/search/smartSubquery.do" method="get" name="srcQueryForm">
1059	<!-- searchSource(natSci, natCommon, genSci, genCommon) -->
1060	<input type="hidden" name="smartSearchSubtype" value="CifFieldsQuery">
1061	<input type="hidden" name="entity_src_nat.pdbx_organism_scientific.value" value="">
1062	<input type="hidden" name="entity_src_nat.common_name.value" value="">
1063	<input type="hidden" name="entity_src_gen.pdbx_gene_src_scientific_name.value" value="">
1064	<input type="hidden" name="entity_src_gen.gene_src_common_name.value" value="">
1065	</form>
1066	</td>
1067	<td width="85%" class="se_datalarge2" valign="top">
1068
1069	<span class="se_subitem">Polymer:</span>
1070	1
1071	<span class="se_subitem">Scientific Name:</span>
1072	<span class="qrb_value">
1073	<a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchSource('', '', 'ESCHERICHIA COLI', '');">
1074	Escherichia coli
1075	</a>
1076	</span>
1077	<a class="se_datalarge" href="http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=562" target="resource_window"><img src="/pdbstatic/explorer/images/taxonomy_icon.gif" BORDER="0" ALT="Go to NCBI Taxonomy entry" TITLE="Go to NCBI Taxonomy entry"></a>
1078
1079	<span class="se_subitem">Common Name:</span>
1080	<span class="qrb_value">
1081	<a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchSource('', '', '', 'BACTERIA');">
1082	Bacteria
1083	</a>
1084	</span>
1085
1086	<span class="se_subitem">Expression system:</span>
1087	<span class="qrb_value">
1088	<a class="sePrimarycitations" onmouseover="this.className='sePrimarycitationsHover';" onmouseout="this.className='sePrimarycitations';" onclick="searchSource('', '', 'ESCHERICHIA COLI', '');">
1089	Escherichia coli
1090	</a>
1091	</span>
1092
1093
1094	<img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="Source">
1095	</td>
1096	</tr>
1097
1098	<tr class="se_back1">
1099	<td width="15%" align="right" class="se_item">
1100	Related PDB Entries
1101	</td>
1102	<td width="85%" class="se_datalarge1">
1103	<table border="0" cellpadding="1" cellspacing="1" width="100%">
1104	<tr>
1105	<td width="20%">
1106	<span class="se_subitem">Id</span>
1107	</td>
1108	<td width="80%">
1109	<span class="se_subitem">Details</span>
1110	</td>
1111	</tr>
1112
1113	<tr>
1114	<td width="15%" class="se_datalarge1">
1115	<a class="se_datalarge" href="/pdb/explore.do?structureId=1CYY" >1CYY</a>
1116	</td>
1117	<td width="65%" class="se_datalarge1">
1118	Crystal structure of the 30 kDa fragment of E. coli DNA topoisomerase I. Hexagonal form
1119	</td>
1120	</tr>
1121
1122	<tr>
1123	<td width="15%" class="se_datalarge1">
1124	<a class="se_datalarge" href="/pdb/explore.do?structureId=1CY9" >1CY9</a>
1125	</td>
1126	<td width="65%" class="se_datalarge1">
1127	Crystal structure of the 30 kDa fragment of E. coli DNA topoisomerase I. Monoclinic form
1128	</td>
1129	</tr>
1130
1131	<tr>
1132	<td width="15%" class="se_datalarge1">
1133	<a class="se_datalarge" href="/pdb/explore.do?structureId=1CY8" >1CY8</a>
1134	</td>
1135	<td width="65%" class="se_datalarge1">
1136	Complex of E.coli DNA topoisomerase I with 5'-thymidine monophosphate and 3'-thymidine monophosphate
1137	</td>
1138	</tr>
1139
1140	<tr>
1141	<td width="15%" class="se_datalarge1">
1142	<a class="se_datalarge" href="/pdb/explore.do?structureId=1CY7" >1CY7</a>
1143	</td>
1144	<td width="65%" class="se_datalarge1">
1145	Complex of E.coli DNA topoisomerase I with 5'-thymidine monophosphate
1146	</td>
1147	</tr>
1148
1149	<tr>
1150	<td width="15%" class="se_datalarge1">
1151	<a class="se_datalarge" href="/pdb/explore.do?structureId=1CY6" >1CY6</a>
1152	</td>
1153	<td width="65%" class="se_datalarge1">
1154	Complex of E.coli DNA topoisomerase I with 3'-thymidine monophosphate
1155	</td>
1156	</tr>
1157
1158	<tr>
1159	<td width="15%" class="se_datalarge1">
1160	<a class="se_datalarge" href="/pdb/explore.do?structureId=1CY4" >1CY4</a>
1161	</td>
1162	<td width="65%" class="se_datalarge1">
1163	Complex of E.coli DNA topoisomerase I with 5'pTpTpTp3'
1164	</td>
1165	</tr>
1166
1167	<tr>
1168	<td width="15%" class="se_datalarge1">
1169	<a class="se_datalarge" href="/pdb/explore.do?structureId=1CY2" >1CY2</a>
1170	</td>
1171	<td width="65%" class="se_datalarge1">
1172	Complex of E.coli DNA topoisomerase I with TpTpTp3'
1173	</td>
1174	</tr>
1175
1176	<tr>
1177	<td width="15%" class="se_datalarge1">
1178	<a class="se_datalarge" href="/pdb/explore.do?structureId=1CY1" >1CY1</a>
1179	</td>
1180	<td width="65%" class="se_datalarge1">
1181	COMPLEX OF E.COLI DNA TOPOISOMERASE I WITH 5'pTpTpT
1182	</td>
1183	</tr>
1184
1185	</table>
1186	</td>
1187	</tr>
1188
1189	<!-- Display one or more non - polymers such as ligands here -->
1190
1191	<tr class="se_back2">
1192	<td width="15%" align="right" valign="top" class="se_item">
1193	Chemical Component
1194	</td>
1195	<td width="85%" valign="top">
1196	<table border="0" cellpadding="1" cellspacing="1" width="100%" >
1197	<tr class="se_subitem2">
1198	<td width="10%">
1199	Identifier
1200	</td>
1201	<td width="35%">
1202	Name
1203	</td>
1204	<td width="25%">
1205	Formula
1206	</td>
1207	<td width="20%">
1208	Drug Similarity
1209	</td>
1210	<td width="20%">
1211	Ligand Structure
1212	</td>
1213
1214	<td width="20%">
1215	Ligand Interaction
1216	</td>
1217
1218	<td>
1219	<form action="/pdb/search/smartSubquery.do" method="get" name="ligandQueryForm">
1220	<input type="hidden" name="smartSearchSubtype" value="LigandIdQuery">
1221	<input type="hidden" name="display" value="true">
1222	<input type="hidden" name="chem_comp.id.value" value="">
1223	<input type="hidden" name="chem_comp.id.comparator" value="=">
1224	</form>
1225	</td>
1226	</tr>
1227
1228
1229	<tr>
1230	<td width="5%" class="se_datalarge2" valign="middle">
1231	<a class="se_datalarge" onclick="searchLigand('A3P');" onmouseover="this.className='se_datalargeHover'" onmouseout="this.className='se_datalarge'">A3P</a>
1232	<img src="/pdbstatic/explorer/images/spacer.gif" alt="" name="NonPolymerEntities">
1233	</td>
1234	<td width="30%" class="se_datalarge2">
1235	ADENOSINE-3'-5'-DIPHOSPHATE
1236	</td>
1237	<td width="20%" class="se_formula2">
1238	C<sub>1</sub><sub>0</sub> H<sub>1</sub><sub>5</sub> N<sub>5</sub> O<sub>1</sub><sub>0</sub> P<sub>2</sub>
1239	</td>
1240	<td width="10%" class="se_datalarge2">
1241	<a class="se_datasmall" href="http://bioinformatics.charite.de/superligands/drug_similarity.php?hetero=A3P" target=resource_window>
1242	[ View ]
1243	</a>
1244	</td>
1245	<td width="15%" class="se_datalarge2">
1246	<a class="se_datasmall" href="/pdb/explore/marvin.do?handler=structureExplorer&hetId=A3P&sid=1CY0">
1247	[ View ]
1248	</a>
1249	</td>
1250
1251	<td width="20%" class="se_datalarge2">
1252	<a class="se_datasmall" href="/pdb/explore/ligand3d.jnlp?hetId=A3P">
1253	[ View ]
1254	</a>
1255	</td>
1256
1257	</tr>
1258
1259
1260	</table>
1261	</td>
1262	</tr>
1263
1264
1265
1266	<tr class="se_back1">
1267	<td width="15%" align="right" valign="top" class="se_item">
1268	<span class="external_ref">SCOP Classification <font size="-2">(version 1.69)</font></span>
1269	</td>
1270	<td width="85%" valign="top">
1271	<table border="0" cellpadding="1" cellspacing="1" width="100%" >
1272	<tr class="se_subitem1">
1273	<td width="12%">
1274	Domain Info
1275	</td>
1276	<td width="13%">
1277	Class
1278	</td>
1279	<td width="15%">
1280	Fold
1281	</td>
1282	<td width="15%">
1283	Superfamily
1284	</td>
1285	<td width="15%">
1286	Family
1287	</td>
1288	<td width="15%">
1289	Domain
1290	</td>
1291	<td width="15%">
1292	Species
1293	</td>
1294	</tr>
1295
1296	<tr>
1297	<td width="12%" class="se_datasmall1">
1298	d1cy0a_
1299	</td>
1300
1301	<td width="13%" class="se_datasmall1">
1302	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56572"> Multi-domain proteins (alpha and beta)</a>
1303	</td>
1304
1305	<td width="15%" class="se_datalarge1">
1306	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56711"> Prokaryotic type I DNA topoisomerase</a>
1307	</td>
1308
1309	<td width="15%" class="se_datalarge1">
1310	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56712"> Prokaryotic type I DNA topoisomerase</a>
1311	</td>
1312
1313	<td width="15%" class="se_datalarge1">
1314	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56713"> Prokaryotic type I DNA topoisomerase</a>
1315	</td>
1316
1317	<td width="15%" class="se_datalarge1">
1318	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56714"> DNA topoisomerase I, 67K N-terminal domain</a>
1319	</td>
1320
1321	<td width="15%" class="se_datalarge1">
1322	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=11&n=56715"> Escherichia coli</a>
1323	</td>
1324	</tr>
1325
1326	</table>
1327	</td>
1328	</tr>
1329
1330
1331
1332	<tr class="se_back2">
1333	<td width="15%" align="right" valign="top" class="se_item">
1334	<span class="external_ref">CATH Classification <font size="-2">(version v2.6.0)</font></span>
1335	</td>
1336	<td width="85%" valign="top">
1337	<table border="0" cellpadding="1" cellspacing="1" width="100%" >
1338	<tr class="se_subitem2">
1339	<td width="20%">
1340	Domain
1341	</td>
1342	<td width="20%">
1343	Class
1344	</td>
1345	<td width="20%">
1346	Architecture
1347	</td>
1348	<td width="20%">
1349	Topology
1350	</td>
1351	<td width="20%">
1352	Homology
1353	</td>
1354	</tr>
1355
1356	<tr>
1357	<td width="20%" class="se_datasmall2">
1358	1cy0A1
1359	</td>
1360
1361	<td width="20%" class="se_datasmall2">
1362	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1274">Alpha Beta</a>
1363	</td>
1364
1365	<td width="20%" class="se_datasmall2">
1366	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1842">3-Layer(aba) Sandwich</a>
1367	</td>
1368
1369	<td width="20%" class="se_datasmall2">
1370	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1978">Rossmann fold</a>
1371	</td>
1372
1373	<td width="20%" class="se_datasmall2">
1374	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=2009">ISOMERASE</a>
1375	</td>
1376	</tr>
1377
1378	<tr>
1379	<td width="20%" class="se_datasmall2">
1380	1cy0A2
1381	</td>
1382
1383	<td width="20%" class="se_datasmall2">
1384	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1">Mainly Alpha</a>
1385	</td>
1386
1387	<td width="20%" class="se_datasmall2">
1388	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=2">Orthogonal Bundle</a>
1389	</td>
1390
1391	<td width="20%" class="se_datasmall2">
1392	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=352">Topoisomerase I; domain 2</a>
1393	</td>
1394
1395	<td width="20%" class="se_datasmall2">
1396	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=353">Topoisomerase I, domain 2</a>
1397	</td>
1398	</tr>
1399
1400	<tr>
1401	<td width="20%" class="se_datasmall2">
1402	1cy0A3
1403	</td>
1404
1405	<td width="20%" class="se_datasmall2">
1406	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=762">Mainly Beta</a>
1407	</td>
1408
1409	<td width="20%" class="se_datasmall2">
1410	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1229">Distorted Sandwich</a>
1411	</td>
1412
1413	<td width="20%" class="se_datasmall2">
1414	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1248">Topoisomerase I; domain 3</a>
1415	</td>
1416
1417	<td width="20%" class="se_datasmall2">
1418	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1249">Topoisomerase I, domain 3</a>
1419	</td>
1420	</tr>
1421
1422	<tr>
1423	<td width="20%" class="se_datasmall2">
1424	1cy0A4
1425	</td>
1426
1427	<td width="20%" class="se_datasmall2">
1428	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=1">Mainly Alpha</a>
1429	</td>
1430
1431	<td width="20%" class="se_datasmall2">
1432	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=2">Orthogonal Bundle</a>
1433	</td>
1434
1435	<td width="20%" class="se_datasmall2">
1436	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=307">Topoisomerase I; domain 4</a>
1437	</td>
1438
1439	<td width="20%" class="se_datasmall2">
1440	<a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=12&n=308">Topoisomerase I, domain 4</a>
1441	</td>
1442	</tr>
1443
1444	</table>
1445	</td>
1446	</tr>
1447
1448	<tr class="se_back1">
1449	<td width="15%" align="right" valign="top" class="se_item">
1450	<span class="external_ref">PFAM Classification </span>
1451	</td>
1452	<td width="85%" valign="top">
1453	<table border="0" cellpadding="1" cellspacing="1" width="100%" >
1454	<tr class="se_subitem1">
1455	<td width="5%">
1456	Chain
1457	</td>
1458	<td width="20%">
1459	PFAM Accession
1460	</td>
1461	<td width="15%">
1462	PFAM ID
1463	</td>
1464	<td width="25%">
1465	Description
1466	</td>
1467	<td width="15%">
1468	Type
1469	</td>
1470	<td width="20%">
1471	Clan ID
1472	</tr>
1473
1474
1475	<tr>
1476	<td width="5%" class="se_datasmall1">
1477	A
1478	</td>
1479	<td width="20%" class="se_datasmall1">
1480	<a class="se_datalarge" href="http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01131" target=resource_window>PF01131</a>
1481	</td>
1482	<td width="15%" class="se_datasmall1">
1483	Topoisom_bac
1484	</td>
1485	<td width="25%" class="se_datasmall1">
1486	DNA topoisomerase
1487	</td>
1488	<td width="15%" class="se_datasmall1">
1489	Family
1490	</td>
1491	<td width="20%" class="se_datasmall1" title="Clan Description: n/a">
1492	n/a</a>
1493	</td>
1494	</tr>
1495
1496	<tr>
1497	<td width="5%" class="se_datasmall1">
1498	A
1499	</td>
1500	<td width="20%" class="se_datasmall1">
1501	<a class="se_datalarge" href="http://www.sanger.ac.uk/cgi-bin/Pfam/getacc?PF01751" target=resource_window>PF01751</a>
1502	</td>
1503	<td width="15%" class="se_datasmall1">
1504	Toprim
1505	</td>
1506	<td width="25%" class="se_datasmall1">
1507	Toprim domain
1508	</td>
1509	<td width="15%" class="se_datasmall1">
1510	Family
1511	</td>
1512	<td width="20%" class="se_datasmall1" title="Clan Description: n/a">
1513	n/a</a>
1514	</td>
1515	</tr>
1516
1517	</table>
1518	</td>
1519	</tr>
1520
1521
1522	<tr class="se_back2">
1523	<td width="15%" align="right" valign="top" class="se_item">
1524	<span class="external_ref">GO Terms</span>
1525	</td>
1526	<td width="85%" valign="top">
1527	<table border="0" cellpadding="1" cellspacing="1" width="100%" >
1528	<tr class="se_subitem1">
1529	<td width="25%">
1530	Polymer
1531	</td>
1532	<td width="25%">
1533	Molecular Function
1534	</td>
1535	<td width="25%">
1536	Biological Process
1537	</td>
1538	<td width="25%">
1539	Cellular Component
1540	</td>
1541	</tr>
1542
1543
1544	<tr>
1545	<td width="25%" class="se_datasmall1">
1546	DNA TOPOISOMERASE I (1CY0:A)
1547	</td>
1548	<td width="25%" class="se_datasmall1">
1549	<ul>
1550
1551	<li><a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=6&n=3676">nucleic acid binding</a>
1552
1553	<li><a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=6&n=3677">DNA binding</a>
1554
1555	<li><a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=6&n=3916">DNA topoisomerase activity</a>
1556
1557	<li><a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=6&n=3917">DNA topoisomerase type I activity</a>
1558
1559	</ul>
1560	</td>
1561	<td width="25%" class="se_datasmall1">
1562	<ul>
1563
1564	<li><a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=4&n=6265">DNA topological change</a>
1565
1566	<li><a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=4&n=6268">DNA unwinding during replication</a>
1567
1568	<li><a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=4&n=6304">DNA modification</a>
1569
1570	</ul>
1571	</td>
1572	<td width="25%" class="se_datasmall1">
1573	<ul>
1574
1575	<li><a class="se_datasmall" href="/pdb/search/smartSubquery.do?smartSearchSubtype=TreeQuery&t=5&n=5694">chromosome</a>
1576
1577	</ul>
1578	</td>
1579	</tr>
1580
1581	</table>
1582	</td>
1583	</tr>
1584	<tr>
1585	<td>
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1589	<input type="hidden" name="strTitle" value="COMPLEX OF E.COLI DNA TOPOISOMERASE I WITH 3'-5'-ADENOSINE DIPHOSPHATE">
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1591	<input type="hidden" name="strPrimaryCitations" value="Feinberg, H., Changela, A., Mondragon, A.">
1592	<input type="hidden" name="strCitationTitle" value="Protein-nucleotide interactions in E. coli DNA topoisomerase I.">
1593	<input type="hidden" name="strJournalAbbrev" value="Nat.Struct.Biol.">
1594	<input type="hidden" name="strJounralVolume" value="v6">
1595	<input type="hidden" name="strJournalPage" value="961-968">
1596	<input type="hidden" name="strJournalYear" value="1999">
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1637	<input type="hidden" name="strKeywords" value="ISOMERASE">
1638	<input type="hidden" name="strSourceLine" value="Polymer: 1, Scientific Name: ESCHERICHIA COLI
1639	Common Name: BACTERIA Expression System: ESCHERICHIA COLI">
1640	<input type="hidden" name="strChemCompIdList" value="A3P,">
1641	<input type="hidden" name="strChemCompNameList" value="ADENOSINE-3'-5'-DIPHOSPHATE,">
1642	<input type="hidden" name="strChemCompFormulaList" value="C10 H15 N5 O10 P2,">
1643	<input type="hidden" name="strChemCompListLen" value="1">
1644	<input type="hidden" name="strScopFoldDesc" value="Prokaryotic type I DNA topoisomerase">
1645	<input type="hidden" name="strScopSFDesc" value="Prokaryotic type I DNA topoisomerase">
1646	<input type="hidden" name="strScopFamDesc" value="Prokaryotic type I DNA topoisomerase">
1647	<input type="hidden" name="strScopDomDesc" value="DNA topoisomerase I, 67K N-terminal domain">
1648	<input type="hidden" name="strScopSpeciesDesc" value="Escherichia coli">
1649	<input type="hidden" name="strCathDomainList" value="1cy0A1,1cy0A2,1cy0A3,1cy0A4,">
1650	<input type="hidden" name="strCathClassList" value="Alpha Beta,Mainly Alpha,Mainly Beta,Mainly Alpha,">
1651	<input type="hidden" name="strCathArchitectureList" value="3-Layer(aba) Sandwich,Orthogonal Bundle,Distorted Sandwich,Orthogonal Bundle,">
1652	<input type="hidden" name="strCathTopologyList" value="Rossmann fold,Topoisomerase I; domain 2,Topoisomerase I; domain 3,Topoisomerase I; domain 4,">
1653	<input type="hidden" name="strCathHomologyList" value="ISOMERASE,Topoisomerase I, domain 2,Topoisomerase I, domain 3,Topoisomerase I, domain 4,">
1654	<input type="hidden" name="strCathListLen" value="4">
1655	<input type="hidden" name="strGoMoleculeList" value="DNA TOPOISOMERASE I,">
1656	<input type="hidden" name="strGoMolecularFunctionList" value="nucleic acid binding,DNA binding,DNA topoisomerase activity,DNA topoisomerase type I activity,\|\|DNA topological change,DNA unwinding during replication,DNA modification,chromosome,">
1657	<input type="hidden" name="strGoBiologicalProcessList" value="\|\|">
1658	<input type="hidden" name="strGoCellularComponentList" value="\|\|">
1659	<input type="hidden" name="strGoListLen" value="1">
1660
1661
1662
1663
1664	<!--a href="#" onClick="javascript:document.PDFCREATOR.submit();">\|PDF\|</a-->
1665	</form>
1666
1667	</td>
1668	</tr>
1669	</table>
1670
1671
1672	</td>
1673	</tr>
1674	<tr>
1675	<td valign="top" class="maintd"> </td>
1676	</tr>
1677	</table>
1678
1679	</td>
1680	</tr> <!-- END MAIN RIGHT -->
1681
1682
1683
1684	<tr>
1685	<td colspan="3">
1686
1687
1688
1689	<table width="100%" border="0" cellpadding="0" cellspacing="0">
1690	<tr> <!-- BEGIN BOTTOM BORDER -->
1691	<td class="foothomelight"><img src="/pdbstatic/images/spacer.gif" alt="" height="15" border="0"></td>
1692	<td class="foothomelight" colspan="2"></td>
1693	</tr>
1694	<tr>
1695	<td class="foothomedark1" colspan="3">
1696	<a class="foothomedark1" href="http://home.rcsb.org/" target="_blank"><i>© RCSB Protein Data Bank   </i></a>
1697	</td>
1698	</tr> <!-- END BOTTOM BORDER -->
1699
1700	<tr>
1701	<td colspan="3"><br></td>
1702	</tr>
1703	</table>
1704
1705	</td>
1706	</tr>
1707
1708	</tbody>
1709	</table>
1710
1711	<script type="text/javascript" language="JavaScript" src="/pdbstatic/common/lib/wz_tooltip.js"></script>
1712	<script type="text/javascript" language=javascript src="/pdbstatic/common/lib/awstats_misc_tracker.js"></script>
1713	<script type="text/javascript" language="JavaScript">
1714	var htmlHttpLoader = new RemoteFileLoader('htmlHttpLoader');
1715	// Props to Simon Willison:
1716	// http://simon.incutio.com/archive/2004/05/26/addLoadEvent
1717	var oldhandler = window.onload;
1718	window.onload = (typeof oldhandler == "function")
1719	? function() { oldhandler(); initExpandableLists(); } : initExpandableLists;
1720	</script>
1721	</body>
1722	</html>

Ticket #41: 1cy0.html

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