--- !ruby/object:Gem::Specification
name: biointerchange
version: !ruby/object:Gem::Version
  version: 1.0.1
platform: ruby
authors:
- Joachim Baran
- Kevin B. Cohen
- Geraint Duck
- Michel Dumontier
- Jin-Dong Kim
autorequire: 
bindir: bin
cert_chain: []
date: 2013-08-19 00:00:00.000000000 Z
dependencies:
- !ruby/object:Gem::Dependency
  name: rdf
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - '>='
      - !ruby/object:Gem::Version
        version: 0.3.4.1
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - '>='
      - !ruby/object:Gem::Version
        version: 0.3.4.1
- !ruby/object:Gem::Dependency
  name: json
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - '>='
      - !ruby/object:Gem::Version
        version: 1.6.4
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - '>='
      - !ruby/object:Gem::Version
        version: 1.6.4
- !ruby/object:Gem::Dependency
  name: getopt
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - '>='
      - !ruby/object:Gem::Version
        version: 1.4.1
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - '>='
      - !ruby/object:Gem::Version
        version: 1.4.1
- !ruby/object:Gem::Dependency
  name: addressable
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - '>='
      - !ruby/object:Gem::Version
        version: 2.3.2
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - '>='
      - !ruby/object:Gem::Version
        version: 2.3.2
- !ruby/object:Gem::Dependency
  name: bio
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - '>='
      - !ruby/object:Gem::Version
        version: 1.4.2
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - '>='
      - !ruby/object:Gem::Version
        version: 1.4.2
- !ruby/object:Gem::Dependency
  name: rspec
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ~>
      - !ruby/object:Gem::Version
        version: 2.8.0
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ~>
      - !ruby/object:Gem::Version
        version: 2.8.0
- !ruby/object:Gem::Dependency
  name: bundler
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - '>='
      - !ruby/object:Gem::Version
        version: 1.1.5
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - '>='
      - !ruby/object:Gem::Version
        version: 1.1.5
- !ruby/object:Gem::Dependency
  name: jeweler
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ~>
      - !ruby/object:Gem::Version
        version: 1.8.4
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ~>
      - !ruby/object:Gem::Version
        version: 1.8.4
- !ruby/object:Gem::Dependency
  name: bio
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - '>='
      - !ruby/object:Gem::Version
        version: 1.4.2
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - '>='
      - !ruby/object:Gem::Version
        version: 1.4.2
- !ruby/object:Gem::Dependency
  name: rdoc
  requirement: !ruby/object:Gem::Requirement
    requirements:
    - - ~>
      - !ruby/object:Gem::Version
        version: '3.12'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    requirements:
    - - ~>
      - !ruby/object:Gem::Version
        version: '3.12'
description: BioInterchange is a Ruby gem, command-line tool, web-service for turning
  heterogeneous data formats such as JSON, XML, GFF3, etc., into RDF."
email: joachim.baran@gmail.com
executables:
- biointerchange
extensions: []
extra_rdoc_files:
- LICENSE.txt
- README.md
files:
- .document
- .rspec
- .travis.yml
- Gemfile
- LICENSE.txt
- README.md
- Rakefile
- VERSION
- bin/biointerchange
- examples/BovineGenomeChrX.gff3.gz
- examples/ReaderModelWriterSequenceDiagram.graffle
- examples/ReaderModelWriterSequenceDiagram.png
- examples/Saccharomyces_cerevisiae_incl_consequences.gvf.gz
- examples/bininda_emonds_mammals.new
- examples/chromosome_BF.gff
- examples/estd176_Banerjee_et_al_2011.2012-11-29.NCBI36.gvf
- examples/gb-2007-8-3-R40.xml
- examples/pubannotation.10096561.json
- examples/pubannotation.10096561.json.old
- examples/pubannotation.2626671.json
- examples/rdfization.rb
- examples/tree1.new
- examples/tree2.new
- examples/vocabulary.rb
- examples/webservice_example.json
- generators/GOxrefify.rb
- generators/javaify.rb
- generators/make_supplement_releases.rb
- generators/pythonify.rb
- generators/rdfxml.rb
- lib/biointerchange.rb
- lib/biointerchange/cdao.rb
- lib/biointerchange/core.rb
- lib/biointerchange/exceptions.rb
- lib/biointerchange/faldo.rb
- lib/biointerchange/genomics/gff3_feature.rb
- lib/biointerchange/genomics/gff3_feature_sequence.rb
- lib/biointerchange/genomics/gff3_feature_set.rb
- lib/biointerchange/genomics/gff3_pragmas.rb
- lib/biointerchange/genomics/gff3_rdf_ntriples.rb
- lib/biointerchange/genomics/gff3_reader.rb
- lib/biointerchange/genomics/gvf_feature.rb
- lib/biointerchange/genomics/gvf_feature_set.rb
- lib/biointerchange/genomics/gvf_pragmas.rb
- lib/biointerchange/genomics/gvf_reader.rb
- lib/biointerchange/genomics/locations.rb
- lib/biointerchange/gff3o.rb
- lib/biointerchange/gfvo.rb
- lib/biointerchange/goxref.rb
- lib/biointerchange/gvf1o.rb
- lib/biointerchange/model.rb
- lib/biointerchange/phylogenetics/cdao_rdf_ntriples.rb
- lib/biointerchange/phylogenetics/newick_reader.rb
- lib/biointerchange/phylogenetics/tree_set.rb
- lib/biointerchange/reader.rb
- lib/biointerchange/registry.rb
- lib/biointerchange/sio.rb
- lib/biointerchange/so.rb
- lib/biointerchange/sofa.rb
- lib/biointerchange/textmining/content.rb
- lib/biointerchange/textmining/content_connection.rb
- lib/biointerchange/textmining/document.rb
- lib/biointerchange/textmining/pdfx_xml_reader.rb
- lib/biointerchange/textmining/process.rb
- lib/biointerchange/textmining/pubannos_json_reader.rb
- lib/biointerchange/textmining/text_mining_rdf_ntriples.rb
- lib/biointerchange/textmining/text_mining_reader.rb
- lib/biointerchange/writer.rb
- spec/exceptions_spec.rb
- spec/gff3_rdfwriter_spec.rb
- spec/gvf_rdfwriter_spec.rb
- spec/phylogenetics_spec.rb
- spec/text_mining_pdfx_xml_reader_spec.rb
- spec/text_mining_pubannos_json_reader_spec.rb
- spec/text_mining_rdfwriter_spec.rb
- supplemental/java/biointerchange/pom.xml
- supplemental/java/biointerchange/src/main/java/org/biointerchange/App.java
- supplemental/java/biointerchange/src/main/java/org/biointerchange/AppSIO.java
- supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/CDAO.java
- supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/FALDO.java
- supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GFF3O.java
- supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GOXRef.java
- supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/GVF1O.java
- supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SIO.java
- supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SO.java
- supplemental/java/biointerchange/src/main/java/org/biointerchange/vocabulary/SOFA.java
- supplemental/java/biointerchange/src/test/java/org/biointerchange/AppTest.java
- supplemental/python/biointerchange/__init__.py
- supplemental/python/biointerchange/cdao.py
- supplemental/python/biointerchange/faldo.py
- supplemental/python/biointerchange/gff3o.py
- supplemental/python/biointerchange/goxref.py
- supplemental/python/biointerchange/gvf1o.py
- supplemental/python/biointerchange/sio.py
- supplemental/python/biointerchange/so.py
- supplemental/python/biointerchange/sofa.py
- supplemental/python/example.py
- supplemental/python/setup.py
- web/about.html
- web/api.html
- web/biointerchange.js
- web/bootstrap/css/bootstrap-responsive.css
- web/bootstrap/css/bootstrap-responsive.min.css
- web/bootstrap/css/bootstrap.css
- web/bootstrap/css/bootstrap.min.css
- web/bootstrap/img/glyphicons-halflings-white.png
- web/bootstrap/img/glyphicons-halflings.png
- web/bootstrap/js/bootstrap.js
- web/bootstrap/js/bootstrap.min.js
- web/bootstrap/js/jquery-1.8.1.min.js
- web/cli.html
- web/css/rdoc-style.css
- web/css/rdoc.css
- web/images/BioInterchange120.png
- web/images/BioInterchange120inv.png
- web/images/BioInterchange160.png
- web/images/BioInterchange160inv.png
- web/images/BioInterchange300.png
- web/images/BioInterchange300inv.png
- web/index.html
- web/ontologies.html
- web/service/rdfizer.fcgi
- web/webservices.html
homepage: http://www.biointerchange.org
licenses:
- MIT
metadata: {}
post_install_message: 
rdoc_options: []
require_paths:
- lib
required_ruby_version: !ruby/object:Gem::Requirement
  requirements:
  - - '>='
    - !ruby/object:Gem::Version
      version: '0'
required_rubygems_version: !ruby/object:Gem::Requirement
  requirements:
  - - '>='
    - !ruby/object:Gem::Version
      version: '0'
requirements: []
rubyforge_project: 
rubygems_version: 2.0.5
signing_key: 
specification_version: 4
summary: An open source framework for transforming heterogeneous data formats into
  RDF.
test_files: []