Contents

require 'phgx'
require 'rbbt/util/cmd'

module FireDB
  PhGx.add_software "FireDB" => ['', :directory]

  def self.predict(accession, sequence, mutation)
    CMD.cmd("perl " + File.join(PhGx.find_software("FireDB"), "firePredText.pl") + " " + [accession, accession, sequence, 10] * " ").read
  end

end

Version data entries

10 entries across 10 versions & 1 rubygems

Version	Path
rbbt-phgx-3.0.0	lib/rbbt/mutation/fireDB.rb
rbbt-phgx-2.1.2	lib/rbbt/mutation/fireDB.rb
rbbt-phgx-2.1.1	lib/rbbt/mutation/fireDB.rb
rbbt-phgx-2.1.0	lib/rbbt/mutation/fireDB.rb
rbbt-phgx-2.0.1	lib/rbbt/mutation/fireDB.rb
rbbt-phgx-2.0.0	lib/rbbt/mutation/fireDB.rb
rbbt-phgx-1.0.0	lib/rbbt/mutation/fireDB.rb
rbbt-phgx-0.3.1	lib/rbbt/mutation/fireDB.rb
rbbt-phgx-0.3.0	lib/rbbt/mutation/fireDB.rb
rbbt-phgx-0.2.0	lib/rbbt/mutation/fireDB.rb