/**********************
 * Override Bootstrap *
 **********************/

/**
 * For scrollspy, etc.
 */
body {
  font-size: 13px;
  position: relative;
}

/**
 * No underlines on links, ever
 */
a:hover, .btn-link:hover {
  text-decoration: none;
}

/**
 * Use normal font weight for labels and indicate they are clickable by setting
 * `cursor: pointer`.
 */
label {
  cursor: pointer;
  margin-bottom: 0px;
  font-weight: normal;
}

/**
 * Most of the times we want code to wrap to next line.
 */
code {
  white-space: normal;
  word-wrap: break-word;
}

/**
 * Without this .disable'd elements hardly look disabled.
 */
.disabled {
  color: #ccc;
}
a.disabled:hover {
  color: #ccc;
  cursor: not-allowed;
}

/**
 * Increase font size, add border, make place for subtext to app name.
 */
.navbar {
  border-radius: 0px;
  border-bottom: 1px solid #eee;
  margin-bottom: 35px;
}
.navbar-brand {
  height: auto;
  padding: 20px 15px;
  font-size: 32px;
  font-family: "Roboto";
  color: rgb(51, 51, 51);
}
.navbar-brand > small {
  font-size: 50%;
}

/**
 * Take out margin from .page-header and use table layout with first cell
 * taking up all available space left by its siblings.
 *
 * Useful for displaying small, extra bit of information in the page
 * header alongside title.
 */
.page-header {
  display: table;
  margin: 0px;
  width: 100%;
  border-color: #ddd;
  padding-bottom: 5px;
}
.page-header > * {
  display: table-cell;
}
.page-header > *:first-child {
  width: 100%;
}

.page-content {
  padding: 5px 0px 0px 5px;
}

.panel {
  border: none;
  box-shadow: none;
  -webkit-box-shadow: none;
}
.panel .panel-heading {
  color: #428BCE;
  padding: 10px 1px;
  font-family: "Roboto";
  background-color: inherit;
}

/**
 * Take padding-right out of .control-label and keep padding of .input-group.
 * Works better when browser is resized to smaller width.
 */
.control-label[class*="col-"] {
 padding-right: 0;
}
.input-group[class*="col-"] {
 padding-left: 15px;
 padding-right: 15px;
}

/**
 * Take our border from each row and apply only to table header.
 */
.table {
  margin-bottom: 0;
}
.table>thead>tr>th, .table>tbody>tr>th, .table>tfoot>tr>th, .table>thead>tr>td,
.table>tbody>tr>td, .table>tfoot>tr>td {
  border-top: none;
  padding-left: 0px;
  font-weight: normal;
}
.table>thead>tr>th {
  border-bottom: 1px solid #ddd;
}


/********************
 * Extend Bootstrap *
 ********************/

/**
 * Use monospace font.
 */
.text-monospace {
  font-family: monospace;
}

/**
 * Make text bold.
 */
.text-bold {
  font-weight: bold;
}

/**
 * Set cursor: pointer on the given element.
 */
.cursor-pointer {
  cursor: pointer;
}

/**
 * Do not wrap text or show horizontal scrollbar if text overflows the width of
 * the element. Show ellipsis instead.
 */
.nowrap-ellipsis {
  overflow-x: hidden;
  white-space: nowrap;
  text-overflow: ellipsis;
}

/**
 * Helpers to override :hover and .active on .nav elements.
 */
.nav.hover-reset>li>a:hover {
  background-color: inherit;
}
.nav.active-bold>li.active>a {
  font-weight: bold;
}

/**
 * Use with .label class to use the foreground color defined by parent element.
 */
.label-reset {
  color: inherit;
  line-height: inherit;
}

/**
 * Set padding: 10px and 15px on li.
 */
.list-padded li {
  padding: 10px 15px;
}


/***************************
 * SequenceServer specific *
 ***************************/
.nojs-error {
  margin-top: 10px;
  padding: 10px;
  color: white;
  background-color: red;
}

.dnd-errors {
  color: red;
  font-size: 18px;
}

.sequence-controls {
  position: absolute;
  top: 4px;
  right: 19px;
}

.biojs-vis-sequence pre {
  margin: 0 0;
  border: none;
  padding: 0;
  border-radius: 0;
  background-color: inherit;
}

.notifications {
  height: 32px;
  position: relative;
  top: -32px;
}

.notification {
  height: 32px !important;
}

.notification .alert-info, .notification .alert-danger {
  border-radius: 6px;
  -webkit-border-radius: 6px;
  -moz-border-radius: 6px;
  box-shadow: 0 3px 7px rgba(0, 0, 0, 0.3);
  -webkit-box-shadow: 0 3px 7px rgba(0, 0, 0, 0.3);
  -moz-box-shadow: 0 3px 7px rgba(0, 0, 0, 0.3);
  font-size: 14px;
  font-weight: bold;
  text-shadow: 0 1px 0 rgba(255, 255, 255, 0.5);
  text-align: center;
  padding: 6px 12px 6px 12px;
}

.databases-container {
  margin-top: -15px;
}

.databases-container .btn {
  text-align: left;
  white-space: normal;
}

.databases .checkbox {
  padding-left: 5px;
}

.databases label {
  padding-left: 0px;
}

#blast > .form-group:last-child {
  margin-top: -5px;
}

#help pre:hover {
  background-color: #FFC;
}

label[for="advanced"] {
  font-family: "Roboto";
  font-size: 16px;
}

#methods{
  font-family: "Roboto";
}

#method, #methods li {
  text-transform: uppercase;
}

#methods li {
  font-size: 15px;
  text-align: center;
  padding-top: 4px;
  padding-bottom: 4px;
  cursor: pointer;
}

.dropdown-menu li {
  border-bottom: 1px solid #ccc;
}

.dropdown-menu li:last-child {
  border-bottom: 0px;
}

#result {
  margin-top: 45px;
}

h1,h2,h3,h4,h5,h6,.page-header {
  font-family: "Roboto";
  color: rgb(51, 51, 51);
}

.main {
  border-right: 1px solid #ddd;
}

.sidebar > .page-header > h4 {
  padding: 8px 0px 0px 8px;
}

.sidebar.affix {
  top: 0px;
}

.index {
  max-height: 416px; /* will accomodate 10 elements. IE 7 and above only. */
  overflow-y: auto;
}

/* Result per query. */
.resultn {
  margin-bottom: 50px;
}

.graphical-overview {
  font-size: 12px;
  text-align: center;
}
svg:not(:root) {
  overflow: visible;
}
.axis path,
.axis line {
    fill: none;
    stroke: #f00;
    stroke-width: 2px;
    shape-rendering: crispEdges;
}
.axis path {
  stroke-width: 3px;
}

.tabular-view {
  margin-bottom: 14px;
}

.hitn {
  padding-top: 14px;
  margin-top: 4px;
}
.hitn h4 {
  cursor: pointer;
}
.hitn h4 span {
  cursor: text;
}
.hitn > p {
  margin-top: 0px;
  margin-bottom: 0px;
}

.hsps {
  margin-top: 14px;
}
.hsp-stats>thead>tr>th {
  border-bottom: none;
  padding: 0px;
}
.hsp-stats>tbody>tr>td {
  padding: 0px;
  padding-bottom: 5px;
  border-bottom: 1px solid #ddd;
}

.alignment {
  margin-top: 8px;
  white-space: pre;
  font-family: monospace;
  line-height: 12px;
  letter-spacing: 1px;
}

.hit-links {
  padding: 14px 0;
  letter-spacing: 1px;
}

.footer a:first-child {
  vertical-align: super;
}

.dnd-overlay {
  position: absolute;
  top: 51px;
  left: 0px;
  right: 0px;
  bottom: 0px;
  z-index: 1000;
  background-color: rgba(255, 255, 255, 0.75);
}

.dnd-overlay * {
  pointer-events: none;
}

.dnd-overlay-container {
  padding-top: 72px;
}

.dnd-overlay-container p {
  font-size: 48px;
}

/* input form */
.col-md-6 .panel-heading h4 {
  margin: 0px;
}

.list-group.databases {
  padding: 0px;
}

.list-group.databases .list-group-item {
  border: none;
  padding: 1px 0px;
}

.list-group.databases .list-group-item input {
    margin: 0;
    padding: 0;
    vertical-align: middle;
    position: relative;
    top: -1px;
}

.report-statistics {
  white-space: pre;
  font-family: monospace;
}

.spinner {
  width: 100%;
  text-align: center;
  padding-bottom: 30px;
}

.glow {
  -webkit-transform: translateZ(0);
  transform: translateZ(0);
  box-shadow: 0 0 1px rgba(0, 0, 0, 0);
  -webkit-backface-visibility: hidden;
  backface-visibility: hidden;
  -moz-osx-font-smoothing: grayscale;
  -webkit-transition-duration: 0.3s;
  transition-duration: 0.3s;
  -webkit-transition-property: box-shadow;
  transition-property: box-shadow;
  box-shadow: 0 0 8px rgba(0, 0, 0, 0.6);
  padding-left: 16px;
  padding-right: 16px;
}

.pos-marker {
  display: none;
}