Sha256: a508471acfccc33c969c9284273c8ae728fe2e68ded3d4e9ec9e6be2e70461a5
Contents?: true
Size: 641 Bytes
Versions: 6
Compression:
Stored size: 641 Bytes
Contents
##
# FINALLY, CLUSTER!
#
module Lederhosen
class CLI
desc "cluster fasta file",
"--input=sorted.fasta --identity=0.80 --output=clusters.uc"
method_option :input, :type => :string, :required => true
method_option :output, :type => :string, :required => true
method_option :identity, :type => :numeric, :required => true
def cluster
identity = options[:identity]
output = options[:output]
input = options[:input]
cmd = [
'uclust',
"--input #{input}",
"--uc #{output}",
"--id #{identity}",
].join(' ')
exec cmd
end
end
end
Version data entries
6 entries across 6 versions & 1 rubygems