subid: mrt00015
rawdir: /Data/scratch/mrt00015/dicoms
origdir: /Data/scratch/mrt00015_withphys_orig
procdir: /Data/scratch/mrt00015_withphys_proc
statsdir: /Data/scratch/mrt00015_withphys_stats
collision: destroy

jobs:
  - step: reconstruct
    scans:
      - dir: s07_epi
        type: func
        label: task1
        task: Faces3A
        bold_reps: 167
        z_slices: 36
        rep_time: 2.0
        physio_files:
            :respiration_signal: RESPData_epiRT_0211201009_21_22_80
            :phys_directory: ../cardiac # Relative to raw dir or absolute
            :respiration_trigger: RESPTrig_epiRT_0211201009_21_22_80
            :cardiac_signal: PPGData_epiRT_0211201009_21_22_80
            :series_description: EPI  fMRI Task1
            :cardiac_trigger: PPGTrig_epiRT_0211201009_21_22_80
      - dir: s08_epi
        type: func
        label: task2
        task: Faces3B
        bold_reps: 167
        z_slices: 36
        rep_time: 2.0
        physio_files:
            :respiration_signal: RESPData_epiRT_0211201009_28_12_835
            :phys_directory: ../cardiac # Relative to raw dir or absolute
            :respiration_trigger: RESPTrig_epiRT_0211201009_28_12_835
            :cardiac_signal: PPGData_epiRT_0211201009_28_12_835
            :series_description: EPI  fMRI Task2
            :cardiac_trigger: PPGTrig_epiRT_0211201009_28_12_835
      - dir: s09_epi
        type: func
        label: rest
        bold_reps: 167
        z_slices: 36
        rep_time: 2.0
        physio_files:
            :respiration_signal: RESPData_epiRT_0211201009_34_39_738
            :phys_directory: ../cardiac # Relative to raw dir or absolute
            :respiration_trigger: RESPTrig_epiRT_0211201009_34_39_738
            :cardiac_signal: PPGData_epiRT_0211201009_34_39_738
            :series_description: EPI  Resting fMRI
            :cardiac_trigger: PPGTrig_epiRT_0211201009_34_39_738
        
  - step: preprocess
    method: Merit220Preproc
    bold_reps:
      - 164
      - 164
      - 164
      
  - step: stats
    method: Merit220Stats
    logresponsefiles:
      - /Volumes/MED-CLUSTER-A.MEDICINE_DATA/team/FMRI/BEHAVIORAL_ANALYSES/CURRENT/johnson.merit220.visit1/Scan/Unprocessed/mrt00015_sep_021110_faces3_recognitionB.txt
      - /Volumes/MED-CLUSTER-A.MEDICINE_DATA/team/FMRI/BEHAVIORAL_ANALYSES/CURRENT/johnson.merit220.visit1/Scan/Unprocessed/mrt00015_sep_021110_faces3_recognitionA.txt
      # - /Data/scratch/mrt00015/onsets/mrt00015_sep_021110_faces3_recognitionA.txt
      # - /Data/scratch/mrt00015/onsets/mrt00015_sep_021110_faces3_recognitionB.txt
      # This is an ordered list, so put A or B first as appropriate. 
    # onsetsfiles:
    #   - /Data/scratch/mrt00015/onsets/mrt00015_faces3_recognitionA.mat
    #   - /Data/scratch/mrt00015/onsets/mrt00015_faces3_recognitionB.mat
    regressorsfiles:
      - rp_apmrt00015_task1.txt
      - rp_apmrt00015_task2.txt
    conditions:
      - new_correct
      - new_incorrect
      - old_correct
      - old_incorrect
    bold_reps:
      - 164
      - 164