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A simple scbi_mapreduce application demo ======================================== This application is a basic sequence processing template. It processes all sequences in fastq_file (a file in FastQ format) removing a MIDs from it. It needs some external requisites to work: EXTERNAL REQUISITES =================== * scbi_blast gem installed At lib/db you can find a preformated MID database. You can modify the files to perform more complicated processing. There are other templates available, you can list them by issuing this command: scbi_mapreduce You can launch the application right now with the following command using 4 cpus/cores and chunks of 100 sequences at a time: ruby main.rb fastq_file 4 100 A server and some workers will be launched, and all sequences in fastq_file will be processed in blocks of 100 sequences. A sequential lineal example is also provided, you can launch it by issuing: ruby linear_implementation.rb fastq_file
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8 entries across 8 versions & 1 rubygems