Sha256: a2d951e7254ffddd32cd7af939ba2df8237051388f317d4e76fbd334b2b86502

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Size: 1.13 KB

Versions: 14

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Stored size: 1.13 KB

Contents

/*
Copyright 2007, 2008 Daniel Zerbino (zerbino@ebi.ac.uk)

    This file is part of Velvet.

    Velvet is free software; you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation; either version 2 of the License, or
    (at your option) any later version.

    Velvet is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with Velvet; if not, write to the Free Software
    Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA

*/
#ifndef _CORRECTEDGRAPH_H_
#define _CORRECTEDGRAPH_H_

void clipTipsHard(Graph * graph, boolean conserveLong);

void correctGraph(Graph * graph, ShortLength *sequenceLengths, Category * sequenceCategories, boolean conserveLong);

// Black arts:
void setMaxReadLength(int value);
void setMaxGaps(int value);
void setMaxDivergence(double value);
#endif

Version data entries

14 entries across 14 versions & 2 rubygems

Version Path
finishm-0.0.9 ext/src/src/correctedGraph.h
bio-velvet_underground-0.3.1 ext/src/src/correctedGraph.h
finishm-0.0.8 ext/src/src/correctedGraph.h
finishm-0.0.7 ext/src/src/correctedGraph.h
finishm-0.0.6 ext/src/src/correctedGraph.h
finishm-0.0.5 ext/src/src/correctedGraph.h
finishm-0.0.4 ext/src/src/correctedGraph.h
finishm-0.0.2 ext/src/src/correctedGraph.h
finishm-0.0.1 ext/src/src/correctedGraph.h
bio-velvet_underground-0.3.0 ext/src/src/correctedGraph.h
bio-velvet_underground-0.2.1 ext/src/src/correctedGraph.h
bio-velvet_underground-0.2.0 ext/src/src/correctedGraph.h
bio-velvet_underground-0.1.0 ext/src/src/correctedGraph.h
bio-velvet_underground-0.0.1 ext/src/src/correctedGraph.h