Sha256: a1aaa54ea97092d1fdbf769bbf36e7e228ec64bb50f8e93357cd3cff20cc92b1
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Size: 894 Bytes
Versions: 9
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Contents
require 'rbbt' require 'rbbt/resource' module STRING extend Resource self.subdir = "share/string" STRING.claim STRING.root, :rake, Rbbt.share.install.STRING.Rakefile.find(:lib) end if defined? Entity and defined? Gene and Entity === Gene module Gene property :string_interactors => :array2single do |*args| threshold = args.first || 800 string = STRING.protein_protein.tsv(:unnamed => true, :persist => true, :type => :double) all = self.ensembl.collect do |gene| interactors = gene.proteins.collect{|protein| Misc.zip_fields((string[protein] || [[],[]])).select{|i, score| score.to_i > threshold}.collect{|ints,s| ints}}.compact.flatten.uniq Protein.setup(interactors, "Ensembl Protein ID", organism).transcript.gene.compact.uniq end all.compact.first.annotate all if Annotated === all.compact.first all end end end
Version data entries
9 entries across 9 versions & 1 rubygems