#
# = AUTOMATIC Table Definition of Hg18
# Copyright::   Copyright (C) 2011, 2012
#               MISHIMA, Hiroyuki
#               <missy at be.to / hmishima at nagasaki-u.ac.jp> 
# License::     The Ruby licence (Ryby's / GPLv2 dual)
#

require "#{::File.dirname(__FILE__)}/db_connector"
require "#{::File.dirname(__FILE__)}/table_class_detector"

module Bio
  module Ucsc
    module Hg18
      extend TableClassDetector
      include DBConnector
      DBConnection.database "hg18"
      
      CHROMS = 
%w(ChrM Chr1 Chr2 Chr3 Chr4 Chr5 Chr6 Chr7 Chr8 Chr9
Chr10 Chr11 Chr12 Chr13 Chr14 Chr15 Chr16 Chr17 Chr18 Chr19
Chr20 Chr21 Chr22 ChrX ChrY)
      base = "#{::File.dirname(__FILE__)}/hg18"

      # chromosomally separated tables
      autoload :Rmsk, "#{base}/rmsk"
      autoload :RmskRM327, "#{base}/rmskrm327"
      autoload :Gold, "#{base}/gold"
      autoload :Gap, "#{base}/gap"
      autoload :IntronEst, "#{base}/intronest"
      autoload :ChainRheMac2, "#{base}/chainrhemac2"
      autoload :ChainTaeGut1, "#{base}/chaintaegut1"
      autoload :ChainPanTro2, "#{base}/chainpantro2"
      autoload :ChainEquCab1, "#{base}/chainequcab1"
      autoload :ChainCalJac1, "#{base}/chaincaljac1"
      autoload :ChainCavPor3, "#{base}/chaincavpor3"
      autoload :ChainRn4, "#{base}/chainrn4"
      autoload :ChainMm9, "#{base}/chainmm9"
      autoload :ChainPonAbe2, "#{base}/chainponabe2"
      autoload :ChainOrnAna1, "#{base}/chainornana1"
      autoload :ChainMonDom4, "#{base}/chainmondom4"
      autoload :ChainCanFam2, "#{base}/chaincanfam2"
      autoload :ChainBosTau4, "#{base}/chainbostau4"
      autoload :ChainFelCat3, "#{base}/chainfelcat3"
      autoload :ChainAnoCar1, "#{base}/chainanocar1"
      autoload :ChainGalGal3, "#{base}/chaingalgal3"
      autoload :ChainXenTro2, "#{base}/chainxentro2"
      autoload :ChainDanRer5, "#{base}/chaindanrer5"
      autoload :ChainOryLat2, "#{base}/chainorylat2"
      autoload :ChainGasAcu1, "#{base}/chaingasacu1"
      autoload :ChainFr2, "#{base}/chainfr2"
      # autoload :ChainTetNig2, "#{base}/chaintetnig2" # changed to regular table
      autoload :ChainPetMar1, "#{base}/chainpetmar1"
      autoload :ChainBraFlo1, "#{base}/chainbraflo1"
      autoload :ChainStrPur2, "#{base}/chainstrpur2"
      autoload :ChainSelf, "#{base}/chainself"
    end
  end
end