--- !ruby/object:Gem::Specification name: quorum version: !ruby/object:Gem::Version version: 0.3.3 prerelease: platform: ruby authors: - Ken Seal autorequire: bindir: bin cert_chain: [] date: 2012-07-19 00:00:00.000000000 Z dependencies: - !ruby/object:Gem::Dependency name: rails requirement: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: '3.1' type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: '3.1' - !ruby/object:Gem::Dependency name: jquery-rails requirement: !ruby/object:Gem::Requirement none: false requirements: - - ! '>=' - !ruby/object:Gem::Version version: '0' type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement none: false requirements: - - ! '>=' - !ruby/object:Gem::Version version: '0' - !ruby/object:Gem::Dependency name: net-ssh requirement: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: 2.3.0 type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: 2.3.0 - !ruby/object:Gem::Dependency name: resque requirement: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: 1.19.0 type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: 1.19.0 - !ruby/object:Gem::Dependency name: resque-result requirement: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: 1.0.1 type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: 1.0.1 - !ruby/object:Gem::Dependency name: bio-blastxmlparser requirement: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: 1.0.1 type: :runtime prerelease: false version_requirements: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: 1.0.1 - !ruby/object:Gem::Dependency name: mysql2 requirement: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: 0.3.11 type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: 0.3.11 - !ruby/object:Gem::Dependency name: rspec-rails requirement: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: '2.6' type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: '2.6' - !ruby/object:Gem::Dependency name: resque_spec requirement: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: '0.8' type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: '0.8' - !ruby/object:Gem::Dependency name: capybara requirement: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: '1.1' type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: '1.1' - !ruby/object:Gem::Dependency name: database_cleaner requirement: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: '0.6' type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: '0.6' - !ruby/object:Gem::Dependency name: factory_girl_rails requirement: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: '1.2' type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: '1.2' - !ruby/object:Gem::Dependency name: jasmine requirement: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: '1.1' type: :development prerelease: false version_requirements: !ruby/object:Gem::Requirement none: false requirements: - - ~> - !ruby/object:Gem::Version version: '1.1' description: Flexible bioinformatics search tool. email: - kas@ncgr.org executables: [] extensions: [] extra_rdoc_files: [] files: - .gitignore - .rspec - .travis.yml - Gemfile - Gemfile.lock - HISTORY.md - MIT-LICENSE - README.rdoc - Rakefile - app/assets/images/quorum/.gitkeep - app/assets/images/quorum/bg.png - app/assets/images/quorum/loading.gif - app/assets/images/quorum/ui-bg_flat_0_aaaaaa_40x100.png - app/assets/images/quorum/ui-bg_flat_75_ffffff_40x100.png - app/assets/images/quorum/ui-bg_glass_55_fbf9ee_1x400.png - app/assets/images/quorum/ui-bg_glass_65_ffffff_1x400.png - app/assets/images/quorum/ui-bg_glass_75_dadada_1x400.png - app/assets/images/quorum/ui-bg_glass_75_e6e6e6_1x400.png - app/assets/images/quorum/ui-bg_highlight-soft_75_cccccc_1x100.png - app/assets/images/quorum/ui-bg_inset-soft_95_fef1ec_1x100.png - app/assets/images/quorum/ui-icons_222222_256x240.png - app/assets/images/quorum/ui-icons_2e83ff_256x240.png - app/assets/images/quorum/ui-icons_454545_256x240.png - app/assets/images/quorum/ui-icons_888888_256x240.png - app/assets/images/quorum/ui-icons_cd0a0a_256x240.png - app/assets/javascripts/quorum/application.js - app/assets/javascripts/quorum/jobs.js - app/assets/javascripts/quorum/quorum.js - app/assets/javascripts/quorum/template_settings.js - app/assets/javascripts/quorum/utilities.js - app/assets/stylesheets/quorum/application.css - app/assets/stylesheets/quorum/autohint.css - app/assets/stylesheets/quorum/jobs.css - app/assets/stylesheets/quorum/jquery-ui-1.8.16.custom.css - app/assets/stylesheets/quorum/tipsy.css - app/controllers/quorum/application_controller.rb - app/controllers/quorum/jobs_controller.rb - app/helpers/quorum/application_helper.rb - app/models/quorum/blastn_job.rb - app/models/quorum/blastn_job_report.rb - app/models/quorum/blastp_job.rb - app/models/quorum/blastp_job_report.rb - app/models/quorum/blastx_job.rb - app/models/quorum/blastx_job_report.rb - app/models/quorum/job.rb - app/models/quorum/tblastn_job.rb - app/models/quorum/tblastn_job_report.rb - app/views/layouts/quorum/application.html.erb - app/views/quorum/jobs/form/_blastn_form.html.erb - app/views/quorum/jobs/form/_blastp_form.html.erb - app/views/quorum/jobs/form/_blastx_form.html.erb - app/views/quorum/jobs/form/_tblastn_form.html.erb - app/views/quorum/jobs/new.html.erb - app/views/quorum/jobs/show.html.erb - app/views/quorum/jobs/templates/_blast_detailed_report_template.html.erb - app/views/quorum/jobs/templates/_blast_template.html.erb - app/views/shared/_error_messages.html.erb - config/locales/en.yml - config/routes.rb - db/migrate/20111031204518_create_jobs.rb - db/migrate/20111031204701_create_blastn_jobs.rb - db/migrate/20111031204719_create_blastx_jobs.rb - db/migrate/20111031204733_create_blastp_jobs.rb - db/migrate/20111031204754_create_tblastn_jobs.rb - db/migrate/20111031204846_create_blastn_job_reports.rb - db/migrate/20111031204903_create_blastx_job_reports.rb - db/migrate/20111031204922_create_blastp_job_reports.rb - db/migrate/20111031204941_create_tblastn_job_reports.rb - db/migrate/20120109232446_add_hit_display_id_to_blast_reports.rb - lib/generators/quorum/images_generator.rb - lib/generators/quorum/install_generator.rb - lib/generators/quorum/styles_generator.rb - lib/generators/quorum/views_generator.rb - lib/generators/templates/README - lib/generators/templates/blast.rb - lib/generators/templates/blast_db.rb - lib/generators/templates/fetch - lib/generators/templates/logger.rb - lib/generators/templates/quorum_initializer.rb - lib/generators/templates/quorum_settings.yml - lib/generators/templates/search - lib/generators/templates/trollop.rb - lib/quorum.rb - lib/quorum/engine.rb - lib/quorum/helpers.rb - lib/quorum/sequence.rb - lib/quorum/version.rb - lib/tasks/blastdb/README - lib/tasks/blastdb/build_blast_db.rb - lib/tasks/jasmine.rake - lib/tasks/quorum_resque.rake - lib/tasks/quorum_tasks.rake - lib/workers/quorum.rb - quorum.gemspec - script/rails - spec/data/nucl_prot_seqs.txt - spec/data/nucl_seqs.txt - spec/data/nucl_seqs_lower.txt - spec/data/nucl_seqs_mixed.txt - spec/data/nucl_seqs_upper.txt - spec/data/prot_seqs_lower.txt - spec/data/prot_seqs_mixed.txt - spec/data/prot_seqs_upper.txt - spec/data/seqs.docx - spec/data/seqs_not_fa.txt - spec/data/tmp/test.tgz - spec/dummy/Rakefile - spec/dummy/app/assets/javascripts/application.js - spec/dummy/app/assets/stylesheets/application.css - spec/dummy/app/controllers/application_controller.rb - spec/dummy/app/helpers/application_helper.rb - spec/dummy/app/mailers/.gitkeep - spec/dummy/app/models/.gitkeep - spec/dummy/app/models/blast.rb - spec/dummy/app/views/layouts/application.html.erb - spec/dummy/config.ru - spec/dummy/config/application.rb - spec/dummy/config/boot.rb - spec/dummy/config/environment.rb - spec/dummy/config/environments/development.rb - spec/dummy/config/environments/production.rb - spec/dummy/config/environments/test.rb - spec/dummy/config/initializers/backtrace_silencers.rb - spec/dummy/config/initializers/inflections.rb - spec/dummy/config/initializers/mime_types.rb - spec/dummy/config/initializers/quorum_initializer.rb - spec/dummy/config/initializers/resque.rb - spec/dummy/config/initializers/secret_token.rb - spec/dummy/config/initializers/session_store.rb - spec/dummy/config/initializers/wrap_parameters.rb - spec/dummy/config/locales/en.yml - spec/dummy/config/locales/quorum.en.yml - spec/dummy/config/quorum_settings.yml - spec/dummy/config/routes.rb - spec/dummy/db/schema.rb - spec/dummy/lib/assets/.gitkeep - spec/dummy/log/.gitkeep - spec/dummy/public/404.html - spec/dummy/public/422.html - spec/dummy/public/500.html - spec/dummy/public/favicon.ico - spec/dummy/quorum/bin/fetch - spec/dummy/quorum/bin/search - spec/dummy/quorum/blastdb/test.nhd - spec/dummy/quorum/blastdb/test.nhi - spec/dummy/quorum/blastdb/test.nhr - spec/dummy/quorum/blastdb/test.nin - spec/dummy/quorum/blastdb/test.nog - spec/dummy/quorum/blastdb/test.nsd - spec/dummy/quorum/blastdb/test.nsi - spec/dummy/quorum/blastdb/test.nsq - spec/dummy/quorum/blastdb/test.phd - spec/dummy/quorum/blastdb/test.phi - spec/dummy/quorum/blastdb/test.phr - spec/dummy/quorum/blastdb/test.pin - spec/dummy/quorum/blastdb/test.pog - spec/dummy/quorum/blastdb/test.psd - spec/dummy/quorum/blastdb/test.psi - spec/dummy/quorum/blastdb/test.psq - spec/dummy/quorum/blastdb/test/contigs.fa - spec/dummy/quorum/blastdb/test/peptides.fa - spec/dummy/quorum/lib/fetch_tools/blast_db.rb - spec/dummy/quorum/lib/logger.rb - spec/dummy/quorum/lib/search_tools/blast.rb - spec/dummy/quorum/lib/trollop.rb - spec/dummy/script/rails - spec/javascripts/fixtures/formatted_sequence.html - spec/javascripts/fixtures/quorum_search_form.html - spec/javascripts/fixtures/quorum_tabs.html - spec/javascripts/helpers/jasmine-jquery.js - spec/javascripts/jobs_spec.js - spec/javascripts/jquery/jquery-ui.min.js - spec/javascripts/jquery/jquery.min.js - spec/javascripts/jquery/jquery_ujs.js - spec/javascripts/quorum_spec.js - spec/javascripts/string_spec.js - spec/javascripts/support/jasmine.yml - spec/javascripts/support/jasmine_config.rb - spec/javascripts/support/jasmine_runner.rb - spec/models/blastn_job_report_spec.rb - spec/models/blastn_job_spec.rb - spec/models/blastp_job_report_spec.rb - spec/models/blastp_job_spec.rb - spec/models/blastx_job_report_spec.rb - spec/models/blastx_job_spec.rb - spec/models/job_spec.rb - spec/models/tblastn_job_report_spec.rb - spec/models/tblastn_job_spec.rb - spec/quorum/quorum_sequence_spec.rb - spec/quorum_installed_spec.rb - spec/requests/jobs_spec.rb - spec/spec_helper.rb - spec/support/streams.rb - spec/tasks/blastdb_rake_spec.rb - spec/templates/blast_db_spec.rb - spec/templates/blast_spec.rb - spec/templates/logger_spec.rb - vendor/assets/javascripts/jquery.autohint.js - vendor/assets/javascripts/jquery.tipsy.js - vendor/assets/javascripts/underscore-min.js homepage: https://github.com/ncgr/quorum licenses: [] post_install_message: rdoc_options: [] require_paths: - lib required_ruby_version: !ruby/object:Gem::Requirement none: false requirements: - - ! '>=' - !ruby/object:Gem::Version version: '0' segments: - 0 hash: -91775132015006220 required_rubygems_version: !ruby/object:Gem::Requirement none: false requirements: - - ! '>=' - !ruby/object:Gem::Version version: '0' segments: - 0 hash: -91775132015006220 requirements: [] rubyforge_project: rubygems_version: 1.8.24 signing_key: specification_version: 3 summary: Flexible bioinformatics search tool. test_files: []