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Contents
module BioInterchange::Genomics
# Represents a named region, a.k.a. landmark, which is defined by the pragma statement 'sequence-region'.
class GFF3Landmark
# Create a new instance of a named region.
#
# +seqid+:: unique identifier (in the GFF3 file context) that identifies this region
# +start_coordinate+:: genomic start coordinate of the region
# +end_coordinate+:: genomic end coordinate of the region
def initialize(seqid, start_coordinate = nil, end_coordinate = nil)
@seqid = seqid
@start_coordinate = start_coordinate
@end_coordinate = end_coordinate
end
# Returns the unique identifier (based on a GFF3 file context) of the region.
def seqid
@seqid
end
# Returns the start coordinate of the region.
def start_coordinate
@start_coordinate
end
# Returns the end coordinate of the region.
def end_coordinate
@end_coordinate
end
end
end
Version data entries
11 entries across 11 versions & 1 rubygems