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Contents
#
# = sample/demo_gff1.rb - very simple demonstration of Bio::GFF
#
# Copyright:: Copyright (C) 2003, 2005
# Toshiaki Katayama <k@bioruby.org>
# 2006 Jan Aerts <jan.aerts@bbsrc.ac.uk>
# 2008 Naohisa Goto <ng@bioruby.org>
# License:: The Ruby License
#
#
# == Description
#
# Very simple demonstration of Bio::GFF, parser classes for GFF formatted
# text.
#
# == Usage
#
# Simply run this script.
#
# $ ruby demo_gff1.rb
#
# == To do
#
# Bio::GFF and related classes have many functions, and we should write
# more example and/or demonstration codes.
#
# == Development information
#
# The code was moved from lib/bio/db/gff.rb.
#
require 'bio'
#if __FILE__ == $0
begin
require 'pp'
alias p pp
rescue LoadError
end
this_gff = "SEQ1\tEMBL\tatg\t103\t105\t.\t+\t0\n"
this_gff << "SEQ1\tEMBL\texon\t103\t172\t.\t+\t0\n"
this_gff << "SEQ1\tEMBL\tsplice5\t172\t173\t.\t+\t.\n"
this_gff << "SEQ1\tnetgene\tsplice5\t172\t173\t0.94\t+\t.\n"
this_gff << "SEQ1\tgenie\tsp5-20\t163\t182\t2.3\t+\t.\n"
this_gff << "SEQ1\tgenie\tsp5-10\t168\t177\t2.1\t+\t.\n"
this_gff << "SEQ1\tgrail\tATG\t17\t19\t2.1\t-\t0\n"
p Bio::GFF.new(this_gff)
#end
Version data entries
15 entries across 15 versions & 1 rubygems